Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
☆122May 29, 2026Updated 2 weeks ago
Alternatives and similar repositories for platon
Users that are interested in platon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50May 18, 2026Updated 3 weeks ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆176Apr 16, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 4 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆650May 15, 2026Updated 3 weeks ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆53Jan 8, 2024Updated 2 years ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆107Jan 22, 2026Updated 4 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆102Jul 8, 2022Updated 3 years ago
- An updated pipeline for pangenome investigation☆361Jun 2, 2026Updated last week
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆80Sep 20, 2023Updated 2 years ago
- Build a partitioned pangenome graph from microbial genomes☆303Jun 3, 2026Updated last week
- BSR-Based Allele Calling Algorithm☆150Jun 3, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆199Updated this week
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆421May 20, 2026Updated 3 weeks ago
- 🔗Genome assembly scaffolder using minimizer graphs☆86Apr 1, 2026Updated 2 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆123Jun 2, 2026Updated last week
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆261Dec 13, 2025Updated 5 months ago
- zDB: comparative bacterial genomics made easy☆40May 6, 2026Updated last month
- ☆21Sep 4, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆179Apr 22, 2026Updated last month
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆111Oct 20, 2023Updated 2 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆87May 7, 2025Updated last year
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆155Oct 2, 2025Updated 8 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆78Dec 5, 2023Updated 2 years ago
- ☆13Sep 4, 2017Updated 8 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆37Feb 26, 2023Updated 3 years ago
- Prediction of prophages from bacterial genomes☆87May 1, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆127Oct 30, 2023Updated 2 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆220Aug 27, 2025Updated 9 months ago
- Bacterial GWAS analysis☆56May 21, 2026Updated 3 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆151Jun 1, 2026Updated last week
- Reorients assembled microbial sequences☆137Jun 5, 2026Updated last week
- Rapid haploid variant calling and core genome alignment☆586Dec 12, 2025Updated 5 months ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago