Alternatives and similar repositories for platon

Users that are interested in platon are comparing it to the libraries listed below

• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆146Updated last month
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆124Updated 2 years ago
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆84Updated this week
• MDU-PHL / abritamr
  A pipeline for running AMRfinderPlus and collating results into functional classes
  ☆91Updated 2 months ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆120Updated last year
• marbl / parsnp
  Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…
  ☆149Updated 4 months ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆157Updated 10 months ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆166Updated 9 months ago
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆108Updated 4 years ago
• SionBayliss / PIRATE
  A toolbox for pangenome analysis and threshold evaluation.
  ☆99Updated 3 years ago
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆104Updated 2 months ago
• thanhleviet / ISfinder-sequences
  Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…
  ☆73Updated 5 years ago
• patrickwest / EukRep
  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
  ☆75Updated last year
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆132Updated 5 months ago
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆113Updated 9 months ago
• songweizhi / MetaCHIP
  Horizontal gene transfer (HGT) identification pipeline
  ☆67Updated 2 years ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆151Updated last month
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆125Updated 2 weeks ago
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆89Updated 2 years ago
• wwood / singlem
  Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes
  ☆179Updated last week
• gem-pasteur / Integron_Finder
  Bioinformatics tool to find integrons in bacterial genomes
  ☆83Updated 9 months ago
• cmks / DAS_Tool
  DAS Tool
  ☆169Updated last year
• qiyunlab / HGTector
  HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
  ☆143Updated 2 years ago
• ncbi / SKESA
  SKESA assembler
  ☆124Updated last year
• linsalrob / PhiSpy
  Prediction of prophages from bacterial genomes
  ☆81Updated last week
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆146Updated last month
• genomicsITER / NanoCLUST
  NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
  ☆114Updated 2 years ago
• tseemann / nullarbor
  "Reads to report" for public health and clinical microbiology
  ☆143Updated 2 months ago
• KatariinaParnanen / MobileGeneticElementDatabase
  Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
  ☆52Updated 4 years ago
• smaegol / PlasFlow
  Software for prediction of plasmid sequences in metagenomic assemblies
  ☆108Updated 4 years ago