Targeted Detection and Reconstruction of Plasmids
☆22May 7, 2024Updated last year
Alternatives and similar repositories for tadrep
Users that are interested in tadrep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Jul 30, 2024Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated last month
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆121Jan 22, 2025Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 16, 2024Updated last year
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆64Mar 3, 2026Updated 2 weeks ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Organism-specific interpretation of AMR genotypes☆15Updated this week
- ☆15Feb 10, 2025Updated last year
- zDB: comparative bacterial genomics made easy☆40Feb 2, 2026Updated last month
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data☆12Updated this week
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆22May 8, 2024Updated last year
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Jan 22, 2026Updated 2 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 4 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- Creating plasmid maps inside ggplot.☆92Sep 2, 2025Updated 6 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Sep 22, 2022Updated 3 years ago
- Rapid determination of appropriate reference genomes.☆100Jan 22, 2025Updated last year
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆44Aug 20, 2025Updated 7 months ago
- whole genome MLST analysis☆51Mar 13, 2026Updated last week
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated this week
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated last month
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Mar 25, 2023Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- Prokaryotic Pangenome Analysis☆24Dec 3, 2021Updated 4 years ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆82May 3, 2025Updated 10 months ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- Just another minhash implementation.☆12Mar 12, 2026Updated last week
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 3 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month