Targeted Detection and Reconstruction of Plasmids
☆22May 7, 2024Updated 2 years ago
Alternatives and similar repositories for tadrep
Users that are interested in tadrep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 2 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jun 16, 2026Updated 2 weeks ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆122May 29, 2026Updated last month
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50May 18, 2026Updated last month
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆67Apr 30, 2026Updated 2 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Organism-specific interpretation of AMR genotypes☆19Mar 17, 2026Updated 3 months ago
- ☆15Feb 10, 2025Updated last year
- zDB: comparative bacterial genomics made easy☆41May 6, 2026Updated last month
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data☆12Jun 9, 2026Updated 3 weeks ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆24May 8, 2024Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆65Jan 22, 2026Updated 5 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- Creating plasmid maps inside ggplot.☆92Sep 2, 2025Updated 10 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆47Aug 20, 2025Updated 10 months ago
- whole genome MLST analysis☆53Jun 17, 2026Updated 2 weeks ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Updated this week
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated last month
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆40Feb 20, 2026Updated 4 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆28Mar 25, 2023Updated 3 years ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- Prokaryotic Pangenome Analysis☆24Dec 3, 2021Updated 4 years ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆85May 3, 2025Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- Just another minhash implementation.☆12May 28, 2026Updated last month
- Reorients assembled microbial sequences☆140Jun 23, 2026Updated last week
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 6 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆109Updated this week