leaemiliepradier / PlasForestLinks
A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
☆19Updated 2 years ago
Alternatives and similar repositories for PlasForest
Users that are interested in PlasForest are comparing it to the libraries listed below
Sorting:
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated this week
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Whole genome core alignments from multiple draft genomes☆13Updated 9 years ago
- plasmidVerify: plasmid contig verification tool☆15Updated 5 years ago
- Plasmid exploration of bacterial genomes☆23Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 4 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- Prophage Activity Estimator☆29Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Predict plasmids from uncorrected long read data☆41Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- ☆26Updated 2 years ago
- ☆13Updated 8 years ago
- Bacterial GWAS analysis☆46Updated 2 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 4 months ago
- ☆20Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Intra-species bacterial contamination detection☆25Updated 10 months ago
- Recombination-free trees☆64Updated 3 months ago
- ☆24Updated 11 months ago
- MAG Circularization Method☆32Updated last month
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- ☆14Updated 2 years ago