bede / seqsumLinks
Robust individual and aggregate checksums for nucleotide sequences
☆17Updated last year
Alternatives and similar repositories for seqsum
Users that are interested in seqsum are comparing it to the libraries listed below
Sorting:
- Simulate mutations in genomes☆15Updated 5 years ago
- Next Index to Query Kmer Intersection☆17Updated 2 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆17Updated this week
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- ☆13Updated 9 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Variant call verification☆16Updated 7 months ago
- Variant call adjudication☆16Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month
- Hierarchical binned indexed data store for on-disk genomic data.☆13Updated 10 months ago
- Hidden Markov Model based Copy number caller☆20Updated this week
- Nanopore read de-multiplexer☆13Updated 5 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 4 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 7 years ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated 2 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 4 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 6 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 5 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Updated last year
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Basecalling configuration prediction through FASTQ files☆32Updated 2 weeks ago
- Minimum plain text representation of kmer sets☆16Updated 10 months ago