Robust individual and aggregate checksums for nucleotide sequences
☆17Mar 3, 2026Updated 3 months ago
Alternatives and similar repositories for seqsum
Users that are interested in seqsum are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Jun 17, 2026Updated last week
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 11 months ago
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated last month
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21May 31, 2026Updated 3 weeks ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated last month
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated last year
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 3 weeks ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 9 months ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆56Mar 13, 2025Updated last year
- ☆14Jan 20, 2016Updated 10 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29May 31, 2026Updated 3 weeks ago
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20May 25, 2026Updated last month
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆37Apr 26, 2026Updated 2 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Pairwise whole genome aligner☆240Jun 18, 2026Updated last week
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…☆24Jun 14, 2026Updated 2 weeks ago
- Bacterial Annotation by Learned Representation of Genes☆60Mar 26, 2026Updated 3 months ago
- Substring index for paths in a graph☆61Mar 28, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 2 years ago
- Split k-mer analysis – version 2☆104Apr 9, 2026Updated 2 months ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 7 months ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆74Apr 1, 2026Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆312Feb 3, 2026Updated 4 months ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 5 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆221Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 5 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆92Jun 3, 2026Updated 3 weeks ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- Python bindings for the TaxonKit library☆43Jun 1, 2026Updated 3 weeks ago