Phigaro is a scalable command-line tool for predicting phages and prophages
☆53Jan 8, 2024Updated 2 years ago
Alternatives and similar repositories for phigaro
Users that are interested in phigaro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- Plasmid exploration of bacterial genomes☆28Sep 27, 2026Updated 2 weeks ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆130Aug 6, 2026Updated 2 months ago
- Prediction of prophages from bacterial genomes☆88May 1, 2026Updated 5 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- WtP: Phage identification via nextflow and docker or singularity☆108Oct 6, 2026Updated last week
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆26Jul 10, 2026Updated 3 months ago
- Identify phage regions in bacterial genomes for masking purposes☆33Sep 5, 2019Updated 7 years ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Jul 12, 2022Updated 4 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- ☆34Dec 20, 2023Updated 2 years ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆106Jul 11, 2023Updated 3 years ago
- Plasmid and antimicrobial resistance pipeline☆16Sep 28, 2026Updated 2 weeks ago
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated 2 years ago
- ☆18Mar 11, 2024Updated 2 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- viralVerify: viral contig verification tool☆79Feb 19, 2026Updated 7 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆95May 7, 2025Updated last year
- IslandPath standalone software☆38Nov 7, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Sep 7, 2026Updated last month
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆131Oct 30, 2023Updated 2 years ago
- A tool for identifying active prophage elements through read mapping☆14Oct 9, 2023Updated 3 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 6 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆81Sep 20, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- zDB: comparative bacterial genomics made easy☆44Oct 1, 2026Updated last week
- A pipeline for running AMRfinderPlus and collating results into functional classes☆103Oct 2, 2026Updated last week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆116Dec 5, 2025Updated 10 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 8 months ago
- Virus Identification By iteRative ANnoTation☆205Apr 15, 2024Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago