Supporting code for uncultivated gut virus manuscript
☆81Jul 17, 2023Updated 3 years ago
Alternatives and similar repositories for MGV
Users that are interested in MGV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unified Human Gut Virome Catalog☆47May 29, 2026Updated 2 months ago
- The viral taxonomic assignment pipeline☆45Apr 16, 2026Updated 3 months ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- ☆35Oct 6, 2025Updated 10 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- Prophage Activity Estimator☆35May 30, 2024Updated 2 years ago
- ☆35Jun 26, 2025Updated last year
- Virus Identification By iteRative ANnoTation☆202Apr 15, 2024Updated 2 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆298Nov 28, 2024Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Updated this week
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- viral Host UnveiLing Kit (vHULK)☆15May 15, 2025Updated last year
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆110Feb 15, 2024Updated 2 years ago
- ☆21Feb 13, 2020Updated 6 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Jul 3, 2026Updated last month
- viralVerify: viral contig verification tool☆76Feb 19, 2026Updated 5 months ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- Discover and annotate the virome☆64Jun 10, 2026Updated 2 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆234Jul 29, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Mining CRISPRs in Environmental Datasets☆125Feb 10, 2023Updated 3 years ago
- Predict prokaryotic host for phage metagenomic sequences☆57Sep 17, 2024Updated last year
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆76Dec 1, 2025Updated 8 months ago
- Identifying viruses from metagenomic data by deep learning☆154May 5, 2026Updated 3 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- An open database of vertebrate-virus interactions☆44Jun 9, 2026Updated 2 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆260May 13, 2026Updated 3 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Reference-guided multiple sequence alignment of viral genomes☆73May 30, 2026Updated 2 months ago
- vaginal microbiota☆13Jan 21, 2025Updated last year
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 2 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Oct 26, 2021Updated 4 years ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- ☆15Jun 30, 2021Updated 5 years ago
- Database of genomes integrated from the gut microbiome and other environments☆46Feb 3, 2023Updated 3 years ago