Alternatives and similar repositories for MGV:

Users that are interested in MGV are comparing it to the libraries listed below

• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆117Updated last year
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆62Updated 2 years ago
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆103Updated 3 years ago
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆70Updated 8 months ago
• hzi-bifo / traitar
  From genomes to phenotypes: Traitar, the microbial trait analyzer
  ☆59Updated 5 years ago
• patrickwest / EukRep
  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
  ☆69Updated 10 months ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆73Updated 2 years ago
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆78Updated this week
• ablab / viralVerify
  viralVerify: viral contig verification tool
  ☆69Updated 3 years ago
• MDU-PHL / abritamr
  A pipeline for running AMRfinderPlus and collating results into functional classes
  ☆77Updated 8 months ago
• Hydro3639 / NanoPhase
  Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …
  ☆32Updated last year
• songweizhi / MetaCHIP
  Horizontal gene transfer (HGT) identification pipeline
  ☆57Updated last year
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆80Updated this week
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆85Updated last year
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆88Updated 8 months ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆70Updated 3 years ago
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆166Updated last month
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆64Updated this week
• KennthShang / PhaBOX
  Local version of the virus identification and analysis web server (tool set)
  ☆49Updated 3 weeks ago
• BigDataBiology / argNorm
  ARG normalization by mapping to the ARO ontology.
  ☆51Updated 2 weeks ago
• wwood / singlem
  Novelty-inclusive microbial community profiling of shotgun metagenomes
  ☆142Updated this week
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆80Updated last year
• Finn-Lab / MAG_Snakemake_wf
  Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
  ☆59Updated 4 years ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆110Updated this week
• Carrion-lab / bacLIFE
  ☆45Updated 2 months ago
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆92Updated last year
• KatariinaParnanen / MobileGeneticElementDatabase
  Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
  ☆46Updated 3 years ago
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆126Updated last month
• gem-pasteur / Integron_Finder
  Bioinformatics tool to find integrons in bacterial genomes
  ☆73Updated 2 weeks ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆59Updated this week