Supporting code for uncultivated gut virus manuscript
☆81Jul 17, 2023Updated 3 years ago
Alternatives and similar repositories for MGV
Users that are interested in MGV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unified Human Gut Virome Catalog☆48May 29, 2026Updated 4 months ago
- The viral taxonomic assignment pipeline☆47Aug 31, 2026Updated last month
- Bioinformatics pipeline used in the Laboratory of Viral Metagenomics (KU Leuven) to trim and assemble paired-end Illumina reads, and clas…☆11Nov 6, 2025Updated 11 months ago
- ☆35Oct 6, 2025Updated last year
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆57Jan 19, 2024Updated 2 years ago
- Prophage Activity Estimator☆35May 30, 2024Updated 2 years ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 5 years ago
- ☆35Jun 26, 2025Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆299Nov 28, 2024Updated last year
- Virus Identification By iteRative ANnoTation☆205Apr 15, 2024Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- viral Host UnveiLing Kit (vHULK)☆14May 15, 2025Updated last year
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆112Sep 15, 2026Updated 3 weeks ago
- ☆21Feb 13, 2020Updated 6 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Sep 23, 2026Updated 2 weeks ago
- viralVerify: viral contig verification tool☆79Feb 19, 2026Updated 7 months ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆77Aug 13, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Discover and annotate the virome☆64Jun 10, 2026Updated 4 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆236Updated this week
- Mining CRISPRs in Environmental Datasets☆128Feb 10, 2023Updated 3 years ago
- Predict prokaryotic host for phage metagenomic sequences☆57Sep 17, 2024Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- Identifying viruses from metagenomic data by deep learning☆154May 5, 2026Updated 5 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- An open database of vertebrate-virus interactions☆46Jun 9, 2026Updated 4 months ago
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆265Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Reference-guided multiple sequence alignment of viral genomes☆72Oct 3, 2026Updated last week
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- vaginal microbiota☆13Jan 21, 2025Updated last year
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 4 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Oct 26, 2021Updated 4 years ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- ☆16Jun 30, 2021Updated 5 years ago