crisprVerse / crisprScore
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
☆16Updated 5 months ago
Alternatives and similar repositories for crisprScore:
Users that are interested in crisprScore are comparing it to the libraries listed below
- Tool package to perform in-silico CRISPR analysis and assessment☆24Updated 10 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 10 months ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆21Updated 3 months ago
- off-targeting assessment of Cas9 gRNAs☆13Updated 3 years ago
- Fast and flexible ORF finder☆69Updated 3 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆26Updated this week
- Analysis pipeline for the GUIDE-seq assay.☆24Updated last month
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆48Updated last month
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆22Updated 3 weeks ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆36Updated 2 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆20Updated last year
- iCodon customizes gene expression based on the codon composition☆14Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Digenome-toolkit ver2.☆16Updated 3 years ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 8 months ago
- Master of Pores 2☆23Updated 3 months ago
- The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…☆18Updated 6 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- ☆23Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆86Updated 2 weeks ago
- ☆29Updated last week
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆42Updated this week
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 4 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 5 months ago
- gatk4 RNA variant calling pipeline☆45Updated last week
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last month
- alternative splicing analysis pipeline☆18Updated 3 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last week