gem-pasteur / PanACoTALinks
PANgenome with Annotations, COre identification, Tree and corresponding Alignments
☆76Updated 2 years ago
Alternatives and similar repositories for PanACoTA
Users that are interested in PanACoTA are comparing it to the libraries listed below
Sorting:
- Prediction of prophages from bacterial genomes☆82Updated 5 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Reorients assembled microbial sequences☆130Updated 3 months ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆81Updated 2 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 7 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆51Updated last week
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- IS mapping software☆57Updated 4 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆82Updated 7 months ago
- Precise host read removal☆108Updated 3 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆90Updated last week
- Estimate metagenomic coverage and sequence diversity☆57Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated last month
- Phigaro is a scalable command-line tool for predicting phages and prophages☆53Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 3 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- ☆24Updated 7 years ago
- ☆20Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆71Updated 5 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 3 months ago