gem-pasteur / PanACoTA
PANgenome with Annotations, COre identification, Tree and corresponding Alignments
☆73Updated last year
Alternatives and similar repositories for PanACoTA:
Users that are interested in PanACoTA are comparing it to the libraries listed below
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆44Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆97Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated last month
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 9 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 4 months ago
- IS mapping software☆53Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆55Updated 5 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆73Updated 5 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 10 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆53Updated this week
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 8 months ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆31Updated last year
- Reorients assembled microbial sequences☆109Updated last week
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆60Updated 5 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆42Updated last year
- ☆79Updated last year
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- Binning Virus Genomes from Metagenomes☆60Updated 2 years ago
- Horizontal gene transfer (HGT) identification pipeline☆56Updated last year
- DDBJ Fast Annotation and Submission Tool☆79Updated this week
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆43Updated last week
- Split Kmer Analysis☆63Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Prediction of prophages from bacterial genomes☆75Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆73Updated 6 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago