BackofenLab / CRISPRcasIdentifier
Machine learning for accurate identification and classification of CRISPR-Cas systems
☆20Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for CRISPRcasIdentifier
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆14Updated 3 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆21Updated 7 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆14Updated 2 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆25Updated last year
- ☆18Updated 2 years ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- ☆35Updated 2 weeks ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆15Updated 3 weeks ago
- ☆16Updated 3 years ago
- Python bindings for the TaxonKit library☆31Updated 3 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆11Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- ☆18Updated 2 years ago
- ☆23Updated 9 months ago
- Detection of phage RBPs based on protein domains and machine learning☆17Updated 9 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆20Updated 3 weeks ago
- a python package for automated generation of phylogenetic trees from genbank files☆16Updated 2 weeks ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 7 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the fu…☆11Updated 3 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated 2 weeks ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆32Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆36Updated 3 weeks ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated 11 months ago
- Bacterial Annotation by Learned Representation of Genes☆54Updated 3 years ago
- snapper☆14Updated 4 months ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated last year