BackofenLab / CRISPRcasIdentifierLinks
Machine learning for accurate identification and classification of CRISPR-Cas systems
☆23Updated last year
Alternatives and similar repositories for CRISPRcasIdentifier
Users that are interested in CRISPRcasIdentifier are comparing it to the libraries listed below
Sorting:
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Updated 2 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Updated 9 months ago
- ☆31Updated last year
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆82Updated 2 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- ☆17Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Updated 4 months ago
- Pipeline for major biological analyses.☆36Updated 3 years ago
- ☆43Updated 7 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated 2 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 3 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆30Updated last week
- Python bindings for the TaxonKit library☆43Updated this week
- Unified Human Gut Virome Catalog☆41Updated 2 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 4 months ago
- Bacterial Annotation by Learned Representation of Genes☆59Updated 5 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Updated 2 years ago
- PHANOTATE: a gene caller for phages.☆82Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 3 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated 2 weeks ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆64Updated last year
- ☆17Updated 2 years ago
- ☆34Updated 4 months ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆28Updated last week
- UFCG: Universal Fungal Core Genes☆35Updated 6 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 2 months ago