aldertzomer / RFPlasmidLinks
Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
☆49Updated last year
Alternatives and similar repositories for RFPlasmid
Users that are interested in RFPlasmid are comparing it to the libraries listed below
Sorting:
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 7 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆48Updated 2 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Gene Absence Presence Identification tool.☆27Updated 6 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated this week
- ☆20Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- ☆24Updated 6 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Prediction of prophages from bacterial genomes☆81Updated 3 months ago
- ☆20Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆76Updated 2 weeks ago
- ☆53Updated 3 months ago
- Prophage Activity Estimator☆28Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated last week
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Order and orientation of complete bacterial genomes☆28Updated 3 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 11 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Whole genome core alignments from multiple draft genomes☆13Updated 9 years ago
- whole genome MLST analysis☆48Updated 3 months ago
- plasmidVerify: plasmid contig verification tool☆14Updated 5 years ago