CRISPRlab / CRISPRdiscoView external linksLinks
CRISPR discovery pipeline
☆33Nov 2, 2018Updated 7 years ago
Alternatives and similar repositories for CRISPRdisco
Users that are interested in CRISPRdisco are comparing it to the libraries listed below
Sorting:
- A CRISPR repeat|spacer analysis tool☆20May 7, 2021Updated 4 years ago
- Mining CRISPRs in Environmental Datasets☆118Feb 10, 2023Updated 3 years ago
- ☆31Dec 28, 2024Updated last year
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Dec 20, 2024Updated last year
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆106Feb 15, 2024Updated last year
- ☆12Aug 15, 2025Updated 5 months ago
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆25Nov 21, 2025Updated 2 months ago
- Variant-aware CRISPR off-target nomination☆24Jan 26, 2026Updated 2 weeks ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆72Dec 22, 2025Updated last month
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Sep 9, 2025Updated 5 months ago
- ☆12Apr 21, 2016Updated 9 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆11Nov 30, 2018Updated 7 years ago
- Estimate PTM hotspots in protein sequence alignments☆14Feb 6, 2019Updated 7 years ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆100Jul 11, 2023Updated 2 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆11Dec 16, 2024Updated last year
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆44May 8, 2024Updated last year
- The CRISPR assembler☆34May 13, 2021Updated 4 years ago
- Prediction of prophages from bacterial genomes☆81Feb 2, 2026Updated last week
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆14Jul 23, 2020Updated 5 years ago
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆14Mar 10, 2020Updated 5 years ago
- download isfinder database☆13Nov 9, 2018Updated 7 years ago
- CRISPR NGS data analysis and visualization pipeline☆16Jul 26, 2019Updated 6 years ago
- ☆15Jun 21, 2022Updated 3 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆16May 6, 2024Updated last year
- ☆34Dec 20, 2023Updated 2 years ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- ☆72Feb 13, 2023Updated 3 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Oct 16, 2024Updated last year
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- Long read metagenomics practical at EBAME18☆18Oct 3, 2018Updated 7 years ago
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Oct 31, 2017Updated 8 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated last year
- Making whole bacterial genome sequencing data analysis easy☆114Apr 22, 2025Updated 9 months ago
- A script for comparing old vs new versions of genome annotations☆21Aug 1, 2023Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆20Apr 20, 2023Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago