CRISPR discovery pipeline
☆33Nov 2, 2018Updated 7 years ago
Alternatives and similar repositories for CRISPRdisco
Users that are interested in CRISPRdisco are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A CRISPR repeat|spacer analysis tool☆20May 7, 2021Updated 4 years ago
- Mining CRISPRs in Environmental Datasets☆120Feb 10, 2023Updated 3 years ago
- ☆31Dec 28, 2024Updated last year
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆107Feb 15, 2024Updated 2 years ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Dec 20, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆25Nov 21, 2025Updated 4 months ago
- ☆12Apr 21, 2016Updated 9 years ago
- CRISPR NGS data analysis and visualization pipeline☆16Jul 26, 2019Updated 6 years ago
- The CRISPR assembler☆34May 13, 2021Updated 4 years ago
- Variant-aware CRISPR off-target nomination☆24Jan 26, 2026Updated 2 months ago
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆14Mar 10, 2020Updated 6 years ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆102Jul 11, 2023Updated 2 years ago
- ☆13Aug 15, 2025Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Sep 9, 2025Updated 6 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆73Dec 22, 2025Updated 3 months ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆32Feb 22, 2018Updated 8 years ago
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆14Jul 23, 2020Updated 5 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- CRISPR Cas9 ontarget prediction software☆32Mar 3, 2025Updated last year
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆16Feb 19, 2021Updated 5 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆16May 6, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Estimate PTM hotspots in protein sequence alignments☆15Feb 6, 2019Updated 7 years ago
- Anno is a variant annotation tool☆24May 18, 2016Updated 9 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆44May 8, 2024Updated last year
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- ☆72Feb 13, 2023Updated 3 years ago
- ☆15Jun 21, 2022Updated 3 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆11Nov 30, 2018Updated 7 years ago
- Prediction of prophages from bacterial genomes☆81Mar 17, 2026Updated last week
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A script for comparing old vs new versions of genome annotations☆21Aug 1, 2023Updated 2 years ago
- ☆35Dec 20, 2023Updated 2 years ago
- Tao Liu's open source libraries for bioinformatics (unstable, pre-alpha)☆26Mar 23, 2021Updated 5 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Aug 8, 2022Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆21Apr 20, 2023Updated 2 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Sep 27, 2021Updated 4 years ago
- Exon-exon splice junctions across SRA☆43Jul 30, 2021Updated 4 years ago