CRISPRlab / CRISPRdisco

Related projects: ⓘ

• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆20Updated 4 months ago
• NBISweden / GUESSmyLT
  An efficient way to guess the library type of your RNA-Seq data.
  ☆29Updated last year
• chizksh / digenome-toolkit2
  Digenome-toolkit ver2.
  ☆15Updated 2 years ago
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 6 years ago
• kevinblighe / ClinicalGradeDNAseq
  Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…
  ☆25Updated 4 years ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆46Updated last year
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆52Updated last month
• Gaius-Augustus / MakeHub
  Fully automated generation of UCSC assembly hubs
  ☆33Updated 7 months ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆40Updated 4 months ago
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆45Updated 3 months ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆37Updated 2 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆43Updated 8 months ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆28Updated last year
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆54Updated 6 years ago
• ICBI / viGEN
  viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
  ☆26Updated 6 months ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated last year
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆33Updated 3 weeks ago
• cnobles / iGUIDE
  Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…
  ☆20Updated 5 months ago
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆19Updated last week
• stephenfloor / extract-transcript-regions
  For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…
  ☆33Updated last year
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 2 years ago
• COMBINE-lab / wasabi
  Prepare Sailfish and Salmon output for downstream analysis
  ☆43Updated 5 years ago
• lpantano / seqcluster
  small RNA analysis from NGS data
  ☆36Updated 2 weeks ago
• tomazc / iCount
  iCount, protein-RNA interaction analytics
  ☆23Updated 2 years ago
• eturro / mmseq
  Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads
  ☆67Updated 6 months ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆32Updated 4 months ago
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆60Updated last month
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated last year
• andreasmock / MetaboDiff
  ☆29Updated 3 years ago
• djhn75 / RNAEditor
  ☆14Updated 2 years ago