A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
☆131Oct 30, 2023Updated 2 years ago
Alternatives and similar repositories for MGEfinder
Users that are interested in MGEfinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆187Apr 16, 2025Updated last year
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆158Sep 2, 2026Updated last month
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆116Dec 5, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Bioinformatics tool to find integrons in bacterial genomes☆95May 7, 2025Updated last year
- geNomad: Identification of mobile genetic elements☆337Mar 29, 2026Updated 6 months ago
- code repo for mobileOG-db☆51Jul 30, 2026Updated 2 months ago
- Mass screening of contigs for antimicrobial and virulence genes