viral Host UnveiLing Kit (vHULK)
☆14May 15, 2025Updated 9 months ago
Alternatives and similar repositories for vHULK
Users that are interested in vHULK are comparing it to the libraries listed below
Sorting:
- Host prediction for phages☆26Nov 6, 2024Updated last year
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 3 years ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆12Jan 8, 2021Updated 5 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆17Feb 3, 2026Updated 3 weeks ago
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Jan 5, 2022Updated 4 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 10 months ago
- Viral protein family functional prediction using protein language models☆22Jan 6, 2026Updated last month
- Supporting code for uncultivated gut virus manuscript☆77Jul 17, 2023Updated 2 years ago
- The viral taxonomic assignment pipeline☆42Feb 5, 2026Updated 3 weeks ago
- VirNet: A deep attention model for viral reads identification☆30Nov 16, 2021Updated 4 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- ☆20Sep 26, 2025Updated 5 months ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated last year
- Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"☆13Nov 2, 2023Updated 2 years ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Jul 2, 2019Updated 6 years ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆31Jul 28, 2018Updated 7 years ago
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆21Aug 15, 2025Updated 6 months ago
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 2 years ago
- A listing of software, tools and databases useful for virome analysis☆60Feb 22, 2026Updated last week
- A simple program to classify the lifestyle of phages.☆16May 22, 2023Updated 2 years ago
- This is the complete code base used in Robert A. Edwards, Katelyn McNair, Karoline Faust, Jeroen Raes, and Bas E. Dutilh (2015) Computati…☆17Nov 7, 2021Updated 4 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated last week
- ☆18May 13, 2021Updated 4 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆78Apr 16, 2025Updated 10 months ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated 7 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Discover and annotate the virome☆59Feb 11, 2026Updated 2 weeks ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 2 years ago
- Virus Identification☆25May 26, 2025Updated 9 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Jan 8, 2026Updated last month
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- De novo VIral Genome Annotator☆24Jan 11, 2026Updated last month
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago