Alternatives and similar repositories for vHULK

Users that are interested in vHULK are comparing it to the libraries listed below

• WeiliWw / VirHostMatcher-Net
  VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.
  ☆19Updated 3 years ago
• ziyewang / MetaBinner
  ☆58Updated last year
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆34Updated last year
• DrKaiyangZheng / VITAP
  The viral taxonomic assignment pipeline
  ☆28Updated 7 months ago
• jessieren / VirHostMatcher
  VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison
  ☆30Updated 7 years ago
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆66Updated 3 years ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆50Updated last year
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆33Updated last year
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆36Updated last month
• ChengPENG-wolf / ViraLM
  Virus Identification
  ☆23Updated 4 months ago
• KennthShang / CHERRY
  Host prediction for phages
  ☆25Updated 11 months ago
• ziyewang / COMEBin
  ☆61Updated last year
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆76Updated last month
• KennthShang / PhaGCN2.0
  ☆35Updated 3 months ago
• KennthShang / PhaMer
  Accurate identification of bacteriophages from metagenomic data using Transformer
  ☆22Updated 11 months ago
• soedinglab / spacepharer
  SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
  ☆41Updated last year
• zoubohao / Deepurify
  Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.
  ☆22Updated 4 months ago
• liu-congcong / MetaDecoder
  An algorithm for clustering metagenomic sequences.
  ☆39Updated 6 months ago
• soedinglab / WIsH
  Predict prokaryotic host for phage metagenomic sequences
  ☆52Updated last year
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆54Updated 5 years ago
• cai91 / GPD
  This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"
  ☆19Updated 4 years ago
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆77Updated 3 weeks ago
• edzuf / CrisprOpenDB
  ☆18Updated 4 years ago
• ablab / viralVerify
  viralVerify: viral contig verification tool
  ☆72Updated 4 years ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆28Updated last year
• apcamargo / ictv-mmseqs2-protein-database
  ☆31Updated last week
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆20Updated last year
• danielpodlesny / samestr
  SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
  ☆24Updated this week
• refresh-bio / PHIST
  Phage-Host Interaction Search Tool
  ☆27Updated last year
• KennthShang / PhaTYP
  PhaTYP: Predicting lifestyle for bacteriophages using BERT
  ☆13Updated 11 months ago