saima-tithi / FastViromeExplorer
FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer
☆13Updated 5 years ago
Related projects: ⓘ
- Taxonomic classification of viruses at Order and Family level☆18Updated last year
- ☆18Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆44Updated 2 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Updated 3 years ago
- Prophage Activity Estimator☆26Updated 3 months ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆17Updated 4 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆16Updated 8 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- ☆21Updated 4 years ago
- ☆29Updated 9 months ago
- ☆43Updated 5 months ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆37Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆19Updated 9 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆41Updated 11 months ago
- Improvement of metagenome-assembled genomes☆48Updated 4 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- A simple program to classify the lifestyle of phages.☆16Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆17Updated 5 months ago
- ☆15Updated 2 weeks ago
- ☆45Updated 6 months ago
- ☆22Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆33Updated 7 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆28Updated 2 years ago
- whole genome MLST analysis☆35Updated 4 months ago
- Set of utilities on sequences and BAM files☆25Updated 2 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆20Updated 2 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆23Updated this week
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆34Updated last year
- KEGG Module Evaluation Tool☆25Updated 10 months ago