FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer
☆15Jul 2, 2019Updated 7 years ago
Alternatives and similar repositories for FastViromeExplorer
Users that are interested in FastViromeExplorer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆18Oct 31, 2017Updated 8 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- Prediction of microbial interactions in complex communities☆14Aug 14, 2024Updated last year
- Exploring the "dusk matter" of the RNA virosphere☆40Mar 25, 2022Updated 4 years ago
- Predict prokaryotic host for phage metagenomic sequences☆57Sep 17, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆35Jun 26, 2025Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆39Apr 9, 2026Updated 4 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆32Jul 28, 2018Updated 8 years ago
- Virus Identification By iteRative ANnoTation☆202Apr 15, 2024Updated 2 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago
- ☆25Feb 21, 2017Updated 9 years ago
- Prophage Activity Estimator☆35May 30, 2024Updated 2 years ago
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆139Apr 9, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆20Apr 24, 2025Updated last year
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆21Mar 8, 2026Updated 5 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆94Aug 13, 2024Updated 2 years ago
- viral Host UnveiLing Kit (vHULK)☆15May 15, 2025Updated last year
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- Identifying viruses from metagenomic data by deep learning☆154May 5, 2026Updated 3 months ago
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆12Jun 30, 2022Updated 4 years ago
- an R package to biotype a community☆14Oct 19, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A listing of software, tools and databases useful for virome analysis☆88Updated this week
- MAGScoT - a MAG scoring and refinement tool☆48Apr 8, 2026Updated 4 months ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆152Updated this week
- VirNet: A deep attention model for viral reads identification☆30Nov 16, 2021Updated 4 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pseudotime Analysis for Bulk Data☆19Aug 2, 2024Updated 2 years ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆298Nov 28, 2024Updated last year
- MetScale: snakemake workflows to scale metagenome analyses☆19May 15, 2025Updated last year
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Oct 3, 2020Updated 5 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Reconstruction and analysis of viral and host genomes at multi-organ level☆21Apr 10, 2026Updated 4 months ago