saima-tithi / FastViromeExplorerLinks
FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer
☆14Updated 5 years ago
Alternatives and similar repositories for FastViromeExplorer
Users that are interested in FastViromeExplorer are comparing it to the libraries listed below
Sorting:
- ☆18Updated 3 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- ☆22Updated 5 years ago
- Prophage Activity Estimator☆26Updated last year
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Discover and annotate the virome☆43Updated 2 months ago
- HoCoRT - Remove specific organisms from sequencing reads☆16Updated 5 months ago
- scripts for microbiome analysis☆11Updated 11 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆30Updated 5 months ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 5 months ago
- KEGG Module Evaluation Tool☆30Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- MAG Circularization Method☆33Updated 3 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- ☆41Updated 4 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated 3 weeks ago
- ☆32Updated 2 years ago