saima-tithi / FastViromeExplorerLinks
FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer
☆14Updated 6 years ago
Alternatives and similar repositories for FastViromeExplorer
Users that are interested in FastViromeExplorer are comparing it to the libraries listed below
Sorting:
- http://huttenhower.sph.harvard.edu/waafle☆22Updated 10 months ago
- ☆21Updated 5 years ago
- ☆18Updated 3 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 4 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆35Updated last month
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 5 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Updated 8 years ago
- ☆20Updated 8 years ago
- scripts for microbiome analysis☆11Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 9 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- ☆40Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆22Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last month
- Discover and annotate the virome☆53Updated 2 weeks ago
- MAG Circularization Method☆32Updated 3 years ago
- ☆11Updated last year
- OPAL: Open-community Profiling Assessment tooL☆29Updated 9 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 weeks ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 9 months ago