A listing of software, tools and databases useful for virome analysis
☆76Jun 1, 2026Updated last week
Alternatives and similar repositories for awesome-virome
Users that are interested in awesome-virome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆74Dec 1, 2025Updated 6 months ago
- Discover and annotate the virome☆63Feb 11, 2026Updated 3 months ago
- The viral taxonomic assignment pipeline☆44Apr 16, 2026Updated last month
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆90Dec 27, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆45Jun 1, 2026Updated last week
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Sep 23, 2025Updated 8 months ago
- Predict prokaryotic host for phage metagenomic sequences☆56Sep 17, 2024Updated last year
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36May 25, 2026Updated 2 weeks ago
- ☆27Jun 20, 2023Updated 2 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆36Jan 22, 2026Updated 4 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆85Dec 4, 2025Updated 6 months ago
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆29Jun 2, 2026Updated last week
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Apr 27, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆60Jun 4, 2025Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆38Apr 9, 2026Updated 2 months ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆33Jun 1, 2026Updated last week
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆15Jul 2, 2019Updated 6 years ago
- viral Host UnveiLing Kit (vHULK)☆14May 15, 2025Updated last year
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆90May 11, 2026Updated 3 weeks ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- Phage Annotation using Protein Structures☆165Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆49Updated this week
- Sketch phylogenetic trees and networks☆26May 28, 2026Updated last week
- ☆34Oct 6, 2025Updated 8 months ago
- ☆13Aug 15, 2025Updated 9 months ago
- ☆18Jun 1, 2026Updated last week
- A community effort to create a shared resource for HMM-based RdRp discovery☆15Feb 13, 2026Updated 3 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆305Feb 3, 2026Updated 4 months ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- Discovery of conserved gene clusters in multiple genomes☆132Jan 16, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Parallelised and automated construction of metagenomic classifier databases of different tools☆21Updated this week
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆23Aug 15, 2025Updated 9 months ago
- Fast DNA search and [host] depletion using minimizers☆111Apr 14, 2026Updated last month
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago