edzuf / CrisprOpenDBLinks
☆18Updated 4 years ago
Alternatives and similar repositories for CrisprOpenDB
Users that are interested in CrisprOpenDB are comparing it to the libraries listed below
Sorting:
- ☆32Updated last year
- ☆32Updated 4 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated last week
- Unified Human Gut Virome Catalog☆32Updated 11 months ago
- Prophage Activity Estimator☆26Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 10 months ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 9 months ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Updated 3 years ago
- Phage-Host Interaction Search Tool☆27Updated 11 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- ☆21Updated 3 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆15Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 6 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 6 months ago
- An algorithm for clustering metagenomic sequences.☆37Updated 2 months ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆30Updated 6 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆48Updated 2 weeks ago
- ☆54Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆26Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago