edzuf / CrisprOpenDB
☆16Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for CrisprOpenDB
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆9Updated 7 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- ☆30Updated 11 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆25Updated last week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆28Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆29Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 2 months ago
- ☆23Updated 9 months ago
- Prophage Activity Estimator☆26Updated 5 months ago
- Phage prediction tools☆15Updated last year
- ☆18Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated 2 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆36Updated last month
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Comparisons of multiple different prophage predictions☆24Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 7 months ago
- ☆24Updated 2 months ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- Taxonomic classification of viruses at Order and Family level☆18Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆39Updated 3 months ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated 11 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆25Updated last week
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆28Updated 6 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 7 months ago
- plasmidVerify: plasmid contig verification tool☆12Updated 4 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆27Updated 10 months ago
- ☆35Updated last year
- ☆17Updated 2 months ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆26Updated 5 months ago