This is the complete code base used in Robert A. Edwards, Katelyn McNair, Karoline Faust, Jeroen Raes, and Bas E. Dutilh (2015) Computational approaches to predict bacteriophage–host relationships. FEMS Microbiology Reviews doi: 10.1093/femsre/fuv048
☆17Nov 7, 2021Updated 4 years ago
Alternatives and similar repositories for PhageHosts
Users that are interested in PhageHosts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆32Jul 28, 2018Updated 8 years ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆12Jan 8, 2021Updated 5 years ago
- VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.☆23May 7, 2023Updated 3 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- viral Host UnveiLing Kit (vHULK)☆15May 15, 2025Updated last year
- A tool to measure bacteriophages plaque sizes☆17May 12, 2023Updated 3 years ago
- Predict prokaryotic host for phage metagenomic sequences☆57Sep 17, 2024Updated last year
- Phage-Host Interaction Search Tool☆33Jul 8, 2024Updated 2 years ago
- PHANOTATE: a gene caller for phages.☆93Dec 2, 2024Updated last year
- Points of Significance: Adding realism to the SIR model for infectious disease epidemics☆13Nov 30, 2021Updated 4 years ago
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆17Jul 13, 2025Updated last year
- ☆11Jul 5, 2020Updated 6 years ago
- DEPRECATED: Use Cenote-Taker 3 instead☆14Jan 19, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Points of Significance: Modeling infectious epidemics☆12Oct 31, 2024Updated last year
- Python package for phage-host interaction prediction☆17Updated this week
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆48May 8, 2024Updated 2 years ago
- R package to work with ctDNA sequencing data☆47Feb 20, 2022Updated 4 years ago
- 石蒜摇摇乐vscode插件☆13Aug 31, 2022Updated 4 years ago
- Pairwise machine learning models for phage-host interaction prediction☆22Jun 23, 2024Updated 2 years ago
- rspatial website using terra☆13Jun 7, 2026Updated 2 months ago
- Resources for the Online Multimedia Lecture at LMU Munich☆14Feb 13, 2022Updated 4 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Oct 12, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Deep learning multi-label classifier of non-coding DNA sequences☆11Mar 3, 2020Updated 6 years ago
- Code for "A Novel Aspect-Guided Deep Transition Model for Aspect Based Sentiment Analysis." on EMNLP 2019.☆21Dec 22, 2019Updated 6 years ago
- Mod for Don't Starve Together☆16Aug 6, 2025Updated last year
- 2024深圳大学毕业论文latex模版☆16Feb 19, 2024Updated 2 years ago
- Script to download FASTA chromosome sequences from UCSC and combine them in one single FASTA file☆15Apr 24, 2018Updated 8 years ago
- Self-Drive Machine Learning Projects☆12Jul 19, 2021Updated 5 years ago
- WebUI自动化测试:Python+Selenium+PO模式+Pytest+Allure☆19Sep 3, 2021Updated 5 years ago
- Pytorch implementation of Get To The Point: Summarization with Pointer-Generator Networks (2017) by Abigail See et al.☆15May 16, 2020Updated 6 years ago
- ☆20Nov 17, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 7 months ago
- siyuan-plugin-picture-library☆13Dec 2, 2025Updated 9 months ago
- protocols for bioinformatics data analysis☆10Sep 22, 2020Updated 5 years ago
- Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"☆13Nov 2, 2023Updated 2 years ago
- A Pipeline to Process RNAseq Data☆17Jun 15, 2022Updated 4 years ago
- A pipeline for viral identification from metagenomic samples☆29Oct 15, 2017Updated 8 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago