VirNet: A deep attention model for viral reads identification
☆30Nov 16, 2021Updated 4 years ago
Alternatives and similar repositories for virnet
Users that are interested in virnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- ☆33Jul 14, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- CNN based classifier for detecting viral sequences among metagenomic contigs☆34Aug 24, 2020Updated 5 years ago
- viral Host UnveiLing Kit (vHULK)☆14May 15, 2025Updated last year
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆85Dec 4, 2025Updated 5 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆36Jan 22, 2026Updated 4 months ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- WtP: Phage identification via nextflow and docker or singularity☆105Mar 19, 2026Updated 2 months ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Jul 2, 2019Updated 6 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- viralFlye pipeline☆19Aug 12, 2024Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆56Sep 17, 2024Updated last year
- Identifying viruses from metagenomic data by deep learning☆155May 5, 2026Updated 3 weeks ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Mar 8, 2026Updated 2 months ago
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Oct 3, 2020Updated 5 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- Virus Identification By iteRative ANnoTation☆195Apr 15, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- De novo VIral Genome Annotator☆24Jan 11, 2026Updated 4 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Exploring the "dusk matter" of the RNA virosphere☆39Mar 25, 2022Updated 4 years ago
- Scalable high-throughput short-read open reading frame prediction☆12Jan 13, 2017Updated 9 years ago
- A simple program to classify the lifestyle of phages.☆17May 22, 2023Updated 3 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Dec 8, 2024Updated last year
- ☆44Nov 20, 2021Updated 4 years ago
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- ☆11Sep 16, 2020Updated 5 years ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆31Jul 28, 2018Updated 7 years ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- viralVerify: viral contig verification tool☆75Feb 19, 2026Updated 3 months ago
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year