a novel encoding method for viral identification in metagenomics
☆15Sep 20, 2023Updated 2 years ago
Alternatives and similar repositories for Seq2Vec
Users that are interested in Seq2Vec are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- GCN classifier for phage taxanomy classification☆32Nov 6, 2024Updated last year
- ☆12Mar 29, 2025Updated last year
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Fast, sensitive and accurate protein remote homology search on GPUs☆15May 6, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated last year
- Genomics 3D Visualizer☆14Jun 14, 2024Updated 2 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆26Jan 8, 2026Updated 7 months ago
- Host prediction for phages☆29Nov 6, 2024Updated last year
- A tool to assemble high-quality phages from metagenomes.☆26May 22, 2026Updated 3 months ago
- Identifying viruses from metagenomic data by deep learning☆154May 5, 2026Updated 3 months ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆19Nov 6, 2024Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆35Jul 29, 2024Updated 2 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Helper scripts for making phylogenies☆15Jul 9, 2026Updated last month
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆18Jul 15, 2025Updated last year
- An open database of vertebrate-virus interactions☆44Jun 9, 2026Updated 2 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 2 months ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆21Jul 24, 2023Updated 3 years ago
- shotgun pipeline☆12Apr 3, 2019Updated 7 years ago
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆11Oct 29, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- hazard and excess hazard modelling with multidimensional penalized splines☆12Mar 25, 2026Updated 5 months ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data☆11Sep 6, 2022Updated 3 years ago
- ☆22Apr 29, 2026Updated 4 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- Mixed Effect Machine Learning☆10Apr 16, 2020Updated 6 years ago
- Prophage Activity Estimator☆35May 30, 2024Updated 2 years ago
- Stochastic Deep Networks☆17Jun 6, 2019Updated 7 years ago
- A collection of softwares to handle and model PacBio kinetic signal data and predict epigenetics modifications.☆10Mar 4, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- viral Host UnveiLing Kit (vHULK)☆15May 15, 2025Updated last year
- ☆12May 29, 2019Updated 7 years ago
- ☆12Dec 6, 2023Updated 2 years ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆35Aug 16, 2022Updated 4 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆41Apr 9, 2026Updated 4 months ago