a novel encoding method for viral identification in metagenomics
☆15Sep 20, 2023Updated 2 years ago
Alternatives and similar repositories for Seq2Vec
Users that are interested in Seq2Vec are comparing it to the libraries listed below
Sorting:
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- GCN classifier for phage taxanomy classification☆31Nov 6, 2024Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Jan 8, 2026Updated last month
- ☆10Mar 29, 2025Updated 11 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Host prediction for phages☆26Nov 6, 2024Updated last year
- ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data☆11Sep 6, 2022Updated 3 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- ☆20Sep 26, 2025Updated 5 months ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆15Nov 6, 2024Updated last year
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆19Jul 24, 2023Updated 2 years ago
- Genomics 3D Visualizer☆14Jun 14, 2024Updated last year
- Fast, sensitive and accurate protein remote homology search on GPUs☆16May 6, 2024Updated last year
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆21Aug 15, 2025Updated 6 months ago
- An open database of vertebrate-virus interactions☆40Dec 16, 2025Updated 2 months ago
- Identifying viruses from metagenomic data by deep learning☆150Jun 1, 2025Updated 9 months ago
- viral Host UnveiLing Kit (vHULK)☆14May 15, 2025Updated 9 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆41Updated this week
- Time-stratified case-crossover studies for aggregated data in environmental epidemiology: a tutorial☆11Jul 25, 2025Updated 7 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Jul 15, 2025Updated 7 months ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated 7 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 9 months ago
- Virus Identification☆25May 26, 2025Updated 9 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated last year
- Virus Protein Family tools☆30Jul 20, 2022Updated 3 years ago
- 使用表达数据，对候选基因进行特征选择，然后构建诊断/预后模型，并使用SHAP分析特征的贡献策划的怒☆14Oct 16, 2025Updated 4 months ago
- The viral taxonomic assignment pipeline☆42Feb 5, 2026Updated 3 weeks ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Aug 16, 2022Updated 3 years ago
- Prophage Activity Estimator☆31May 30, 2024Updated last year
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆28May 6, 2025Updated 9 months ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆35Nov 27, 2025Updated 3 months ago
- we collected Gram-stained bacteria images from lower respiratory tract specimens of patients with lung infections in Chinese PLA General…☆12Jan 18, 2024Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year