a novel encoding method for viral identification in metagenomics
☆15Sep 20, 2023Updated 2 years ago
Alternatives and similar repositories for Seq2Vec
Users that are interested in Seq2Vec are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- GCN classifier for phage taxanomy classification☆32Nov 6, 2024Updated last year
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- ☆12Mar 29, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Fast, sensitive and accurate protein remote homology search on GPUs☆15May 6, 2024Updated 2 years ago
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated last year
- Genomics 3D Visualizer☆14Jun 14, 2024Updated 2 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆26Jan 8, 2026Updated 8 months ago
- Host prediction for phages☆29Nov 6, 2024Updated last year
- A tool to assemble high-quality phages from metagenomes.☆27Sep 10, 2026Updated last week
- Identifying viruses from metagenomic data by deep learning☆154May 5, 2026Updated 4 months ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆19Nov 6, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- VirBot: a protein-based RNA virus detector for metagenomic data☆35Jul 29, 2024Updated 2 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago
- Helper scripts for making phylogenies☆15Jul 9, 2026Updated 2 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆18Jul 15, 2025Updated last year
- An open database of vertebrate-virus interactions☆44Jun 9, 2026Updated 3 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 3 months ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆22Jul 24, 2023Updated 3 years ago
- shotgun pipeline☆12Apr 3, 2019Updated 7 years ago
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆11Oct 29, 2021Updated 4 years ago
- hazard and excess hazard modelling with multidimensional penalized splines☆12Mar 25, 2026Updated 5 months ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data☆11Sep 6, 2022Updated 4 years ago
- ☆23Apr 29, 2026Updated 4 months ago
- ☆34Dec 20, 2023Updated 2 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- Mixed Effect Machine Learning☆10Apr 16, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Prophage Activity Estimator☆35May 30, 2024Updated 2 years ago
- Stochastic Deep Networks☆17Jun 6, 2019Updated 7 years ago
- A collection of softwares to handle and model PacBio kinetic signal data and predict epigenetics modifications.☆10Mar 4, 2024Updated 2 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- viral Host UnveiLing Kit (vHULK)☆15May 15, 2025Updated last year
- ☆12May 29, 2019Updated 7 years ago
- ☆12Dec 6, 2023Updated 2 years ago