dimiboeckaerts / BacteriophageHostPrediction
Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"
☆12Updated last year
Alternatives and similar repositories for BacteriophageHostPrediction:
Users that are interested in BacteriophageHostPrediction are comparing it to the libraries listed below
- Detection of phage RBPs based on protein domains and machine learning☆22Updated 2 weeks ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆13Updated 3 months ago
- ☆28Updated this week
- Viral protein family functional prediction using protein language models☆18Updated 8 months ago
- Host prediction for phages☆23Updated 3 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated last month
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 5 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆32Updated last year
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆30Updated 6 years ago
- Unified Human Gut Virome Catalog☆27Updated 7 months ago
- A simple program to classify the lifestyle of phages.☆16Updated last year
- Pairwise machine learning models for phage-host interaction prediction☆15Updated 7 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 2 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆62Updated 4 months ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Updated 3 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated 10 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆29Updated 6 months ago
- Phage prediction tools☆15Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ☆16Updated 3 years ago
- Phage-Host Interaction Search Tool☆27Updated 7 months ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆44Updated 2 weeks ago
- PHANOTATE: a tool to annotate phage genomes.☆72Updated 2 months ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- GCN classifier for phage taxanomy classification☆31Updated 3 months ago
- ☆38Updated 2 months ago
- Local version of the virus identification and analysis web server (tool set)☆42Updated last week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 2 months ago
- Throughput PhATE processing of draft or finished phage genomes☆14Updated 3 years ago