Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"
☆13Nov 2, 2023Updated 2 years ago
Alternatives and similar repositories for BacteriophageHostPrediction
Users that are interested in BacteriophageHostPrediction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pairwise machine learning models for phage-host interaction prediction☆21Jun 23, 2024Updated last year
- Detection of phage RBPs based on protein domains and machine learning☆32Feb 5, 2025Updated last year
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 5 years ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆12Jan 8, 2021Updated 5 years ago
- This is the repository for DeepHost, a phage host prediction tool.☆21Dec 12, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆17Jul 13, 2025Updated 9 months ago
- viral Host UnveiLing Kit (vHULK)☆14May 15, 2025Updated 11 months ago
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated 9 months ago
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆80Apr 16, 2025Updated last year
- ☆38Dec 6, 2023Updated 2 years ago
- Learn Julia in one workday!☆13Jan 7, 2020Updated 6 years ago
- Host prediction for phages☆26Nov 6, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparativ…☆15Sep 22, 2023Updated 2 years ago
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- ☆17Mar 11, 2024Updated 2 years ago
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆15Mar 16, 2026Updated last month
- Utilities for downloading and managing protein FASTA files.☆14Mar 20, 2024Updated 2 years ago
- The goal of this project was to predict stock market prices using a recurrent neural network. This project was inspired by the Standford …☆13Jul 5, 2023Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆38Dec 20, 2024Updated last year
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 7 years ago
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆21Nov 17, 2022Updated 3 years ago
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- ☆10Dec 16, 2024Updated last year
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated last year
- Source code for the DeepViral paper☆11Mar 17, 2021Updated 5 years ago
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆13May 27, 2025Updated 10 months ago
- A tool to easily create informative genomic feature plots☆17Dec 26, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Official Pytorch implementation of TargetNet, Bioinformatics 2022☆14Apr 9, 2022Updated 4 years ago
- ☆12May 31, 2024Updated last year
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser☆12Oct 5, 2025Updated 6 months ago
- ☆15Jan 10, 2023Updated 3 years ago
- Variant Calling and Postfiltering☆11Jan 9, 2017Updated 9 years ago
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 2 years ago
- multiPhATE with comparative genomics☆18Jun 14, 2021Updated 4 years ago