WeiliWw / VirHostMatcher-NetLinks
VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.
☆19Updated 3 years ago
Alternatives and similar repositories for VirHostMatcher-Net
Users that are interested in VirHostMatcher-Net are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆30Updated 6 years ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- ☆32Updated last year
- Prophage Activity Estimator☆26Updated last year
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆15Updated last year
- Phage-Host Interaction Search Tool☆27Updated 10 months ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- ☆18Updated 4 years ago
- ☆32Updated 3 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- Unified Human Gut Virome Catalog☆31Updated 10 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 8 months ago
- ☆28Updated 3 months ago
- Phage prediction tools☆15Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago
- Comparisons of multiple different prophage predictions☆25Updated 3 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated last week
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 10 months ago
- ☆18Updated 3 years ago
- ☆35Updated last year
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆19Updated 3 weeks ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- ☆20Updated 3 years ago