Ensemble binning strategies for combining the output of multiple binning methods.
☆22Mar 11, 2023Updated 3 years ago
Alternatives and similar repositories for UniteM
Users that are interested in UniteM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 7 months ago
- A repo to reproduce the experiments in the YACHT manuscript☆12Nov 2, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Phage-Host Interaction Search Tool☆32Jul 8, 2024Updated 2 years ago
- CAMITAX: Taxon labels for microbial genomes☆31Dec 14, 2023Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆269Mar 20, 2025Updated last year
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆27Nov 19, 2025Updated 7 months ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆30Mar 13, 2026Updated 3 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Detection of NCLDV signatures in 'omic data☆35Dec 28, 2025Updated 6 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆191Updated this week
- A simple script to display stuff on a world map with R and ggplot☆18Feb 17, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆18Updated this week
- An algorithm for clustering metagenomic sequences.☆42Dec 12, 2025Updated 6 months ago
- ☆78Mar 10, 2024Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆109Jul 1, 2026Updated last week
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆39Jul 1, 2026Updated last week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 3 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆164Jun 7, 2026Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 2 months ago
- ☆22Dec 9, 2023Updated 2 years ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- ☆65Feb 27, 2024Updated 2 years ago
- ☆62Dec 30, 2020Updated 5 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Swiss-Army-Knife for Bioinformaticians☆15May 11, 2026Updated last month
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 7 months ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10May 17, 2024Updated 2 years ago
- Simulate metagenomic short reads from one or more populations.☆26Jan 29, 2025Updated last year
- Metagenomic Binning Algorithm☆54Jan 16, 2026Updated 5 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Jun 15, 2026Updated 3 weeks ago
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 4 years ago