aziele / phirbo
Predict prokaryotic hosts for phage (meta) genomic sequences
☆11Updated 2 years ago
Alternatives and similar repositories for phirbo:
Users that are interested in phirbo are comparing it to the libraries listed below
- Phage-Host Interaction Search Tool☆27Updated 7 months ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Updated 3 years ago
- Detection of NCLDV signatures in 'omic data☆33Updated 8 months ago
- ☆31Updated last year
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- ☆29Updated 2 weeks ago
- Unified Human Gut Virome Catalog☆27Updated 7 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆30Updated 6 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆18Updated 2 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆31Updated 6 months ago
- Quickly get the taxonomy of a genome☆10Updated last year
- ☆19Updated 3 years ago
- Identifying ViRal and Circular content in metAgenomes☆11Updated 6 years ago
- Host prediction for phages☆23Updated 4 months ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆11Updated 4 years ago
- ☆16Updated 4 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated 10 months ago
- Tools to analyze the differences and similarities between CRISPR arrays☆10Updated 2 months ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Updated 3 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆23Updated 4 months ago
- ☆16Updated 3 years ago
- MAG Circularization Method☆33Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆16Updated last year
- strain-level analysis tools☆34Updated 4 months ago
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- ☆13Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago