VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial origin.
☆18Oct 31, 2017Updated 8 years ago
Alternatives and similar repositories for VirusSeeker-Virome
Users that are interested in VirusSeeker-Virome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆15Jul 2, 2019Updated 6 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- ☆33Jul 14, 2021Updated 4 years ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 3 years ago
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆138Apr 9, 2020Updated 6 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Prophage Activity Estimator☆33May 30, 2024Updated 2 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Oct 3, 2020Updated 5 years ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- ☆13Feb 29, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- ☆34Dec 20, 2023Updated 2 years ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- CNN based classifier for detecting viral sequences among metagenomic contigs☆34Aug 24, 2020Updated 5 years ago
- Set of tools for viral metagenomics.☆17Jun 1, 2026Updated last week
- Mining CRISPRs in Environmental Datasets☆125Feb 10, 2023Updated 3 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆13Sep 26, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- A simulator for horizontal gene transfer (HGT) in microbial communities☆10Oct 5, 2020Updated 5 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆12Apr 25, 2022Updated 4 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- Influenza genome analysis Nextflow workflow☆32Sep 15, 2025Updated 8 months ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆31Jul 28, 2018Updated 7 years ago
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- The CRISPR assembler☆35May 13, 2021Updated 5 years ago
- ☆11Sep 16, 2020Updated 5 years ago
- Opinionated viral metagenomics workflow☆15May 22, 2026Updated 2 weeks ago
- Workflow for detecting genome-wide horizontal gene transfers☆10May 29, 2018Updated 8 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Feb 7, 2018Updated 8 years ago
- Reconstruction and analysis of viral and host genomes at multi-organ level☆21Apr 10, 2026Updated last month
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago