simroux / VirSorter
Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)
☆104Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for VirSorter
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆134Updated 4 years ago
- Pan-genome wide association studies☆150Updated 5 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆110Updated last week
- Pairwise SNP distance matrix from a FASTA sequence alignment☆127Updated 8 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆110Updated last year
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆81Updated 6 years ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆98Updated 3 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆108Updated last week
- Supporting code for uncultivated gut virus manuscript☆66Updated last year
- DDBJ Fast Annotation and Submission Tool☆78Updated last month
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆77Updated last year
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆97Updated last year
- viralVerify: viral contig verification tool☆66Updated 3 years ago
- Virus Identification By iteRative ANnoTation☆152Updated 7 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆91Updated 2 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆71Updated 11 months ago
- A toolbox for comparative genomics.☆97Updated 3 years ago
- Bioinformatics program inStrain☆147Updated 6 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆84Updated last year
- DAS Tool☆140Updated 6 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated 8 months ago
- OPERA-MS - Hybrid Metagenomic Assembler☆91Updated 4 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆108Updated 6 months ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆103Updated last week
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆61Updated 4 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆128Updated this week
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆129Updated this week
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆70Updated last year
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆111Updated last year
- Short Read Sequence Typing for Bacterial Pathogens☆125Updated 3 years ago