simroux / VirSorterLinks
Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)
☆101Updated 5 years ago
Alternatives and similar repositories for VirSorter
Users that are interested in VirSorter are comparing it to the libraries listed below
Sorting:
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆120Updated last month
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆138Updated 5 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆142Updated last year
- Clustering cONtigs with COverage and ComposiTion☆134Updated 5 years ago
- DAS Tool☆159Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated 2 years ago
- Virus Identification By iteRative ANnoTation☆174Updated last year
- ☆132Updated this week
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆116Updated last year
- Short Read Sequence Typing for Bacterial Pathogens☆139Updated 4 years ago
- Create a tree using Mash distances☆172Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated last week
- Software for prediction of plasmid sequences in metagenomic assemblies☆108Updated 4 years ago
- DDBJ Fast Annotation and Submission Tool☆83Updated last month
- Bioinformatics program inStrain☆177Updated 5 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Updated 3 years ago
- Processing pipeline for pan-genome visulization and exploration☆141Updated 2 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆146Updated last month
- "Reads to report" for public health and clinical microbiology☆141Updated last year
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆84Updated 7 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆167Updated last month
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated last year
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆104Updated 8 months ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆120Updated 9 months ago
- A toolbox for comparative genomics.☆105Updated 4 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆72Updated 2 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- Chromosome-level scaffolding using multiple references☆162Updated last year
- Best-fit model selection☆85Updated last year