gussow / seekerLinks
☆33Updated 4 years ago
Alternatives and similar repositories for seeker
Users that are interested in seeker are comparing it to the libraries listed below
Sorting:
- Predict prokaryotic host for phage metagenomic sequences☆53Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- Prophage Activity Estimator☆30Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆40Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- ☆34Updated 2 years ago
- ☆33Updated 3 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated 2 months ago
- ☆66Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated 6 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Updated this week
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆58Updated 7 months ago
- PHANOTATE: a gene caller for phages.☆81Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Strain Resolution ON Graphs☆50Updated 2 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- Unified Human Gut Virome Catalog☆41Updated 2 months ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 7 months ago
- ☆45Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆33Updated 6 years ago
- Discover and annotate the virome☆58Updated 3 months ago
- viralVerify: viral contig verification tool☆74Updated 4 years ago
- Bacterial GWAS analysis☆46Updated 2 weeks ago
- ☆17Updated 3 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆96Updated 8 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- MAG Circularization Method☆32Updated 2 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago