gussow / seekerView external linksLinks
☆33Jul 14, 2021Updated 4 years ago
Alternatives and similar repositories for seeker
Users that are interested in seeker are comparing it to the libraries listed below
Sorting:
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated last year
- PHANOTATE: a gene caller for phages.☆82Dec 2, 2024Updated last year
- ☆34Dec 20, 2023Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Dec 20, 2024Updated last year
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Nov 20, 2023Updated 2 years ago
- ☆11Sep 16, 2020Updated 5 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- a comparative genome browser for bacteriophages☆20Jan 17, 2025Updated last year
- A simple program to classify the lifestyle of phages.☆17May 22, 2023Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆54Sep 17, 2024Updated last year
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Oct 31, 2017Updated 8 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- CNN based classifier for detecting viral sequences among metagenomic contigs☆34Aug 24, 2020Updated 5 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Nov 25, 2025Updated 2 months ago
- ☆10Jan 24, 2023Updated 3 years ago
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Jan 22, 2026Updated 3 weeks ago
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Oct 3, 2020Updated 5 years ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- ☆21Nov 17, 2022Updated 3 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Mar 25, 2025Updated 10 months ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 4 years ago
- Mining CRISPRs in Environmental Datasets☆118Feb 10, 2023Updated 3 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- Identifying viruses from metagenomic data by deep learning☆150Jun 1, 2025Updated 8 months ago
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆137Apr 9, 2020Updated 5 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆279Nov 28, 2024Updated last year
- Phage Annotation using Protein Structures☆148Feb 1, 2026Updated last week
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Oct 16, 2024Updated last year
- ☆17May 26, 2022Updated 3 years ago
- ☆18Apr 6, 2022Updated 3 years ago
- viralVerify: viral contig verification tool☆74Aug 22, 2021Updated 4 years ago
- ☆18May 13, 2021Updated 4 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆78Apr 16, 2025Updated 9 months ago
- Virus Identification By iteRative ANnoTation☆185Apr 15, 2024Updated last year
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 2 months ago
- A python library for predicting phage lifestyle based on genome sequence☆40Aug 9, 2023Updated 2 years ago