☆33Jul 14, 2021Updated 4 years ago
Alternatives and similar repositories for seeker
Users that are interested in seeker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- ☆11Sep 16, 2020Updated 5 years ago
- PHANOTATE: a gene caller for phages.☆91Dec 2, 2024Updated last year
- ☆34Dec 20, 2023Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆27Nov 20, 2023Updated 2 years ago
- CNN based classifier for detecting viral sequences among metagenomic contigs☆34Aug 24, 2020Updated 5 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- a comparative genome browser for bacteriophages☆21Jun 6, 2026Updated 3 weeks ago
- Predict prokaryotic host for phage metagenomic sequences☆56Sep 17, 2024Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆37Jun 26, 2026Updated last week
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆18Oct 31, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- Identifying viruses from metagenomic data by deep learning☆154May 5, 2026Updated 2 months ago
- Mining CRISPRs in Environmental Datasets☆124Feb 10, 2023Updated 3 years ago
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆41Apr 20, 2026Updated 2 months ago
- ☆11Jan 24, 2023Updated 3 years ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 7 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- viralVerify: viral contig verification tool☆75Feb 19, 2026Updated 4 months ago
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆138Apr 9, 2020Updated 6 years ago
- ☆20Nov 17, 2022Updated 3 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆293Nov 28, 2024Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- WtP: Phage identification via nextflow and docker or singularity☆107Mar 19, 2026Updated 3 months ago
- VirNet: A deep attention model for viral reads identification☆30Nov 16, 2021Updated 4 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- ☆19May 13, 2021Updated 5 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆37Feb 26, 2023Updated 3 years ago
- Virus Identification By iteRative ANnoTation☆197Apr 15, 2024Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago