NeuroCSUT / ViraMinerLinks
CNN based classifier for detecting viral sequences among metagenomic contigs
â34Updated 5 years ago
Alternatives and similar repositories for ViraMiner
Users that are interested in ViraMiner are comparing it to the libraries listed below
Sorting:
- Re-analysis of data provided by Gihawi et al. 2023 bioRxivâ26Updated 2 years ago
- đ§Ź MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotationsâ35Updated last year
- Deep learning for Metagenome Assembly Error Detectionâ25Updated 4 years ago
- MicrobeDirectory 2.0â22Updated 5 years ago
- A comprehensive pipeline for short read metagenomic dataâ25Updated 5 years ago
- Inference of putative transmission phylogenetic clustersâ11Updated 5 years ago
- A manually curated database of human gut metabolic modules.â17Updated 7 years ago
- â29Updated last year
- Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemesâ28Updated 10 months ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USAâ22Updated 3 years ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.â35Updated 6 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.â27Updated 6 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomesâ51Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooLâ29Updated 9 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologiesâ36Updated last year
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3â37Updated 3 years ago
- Implementation of Krona to QIIME2â16Updated last year
- A Strategy for Building and Using a Human Reference Pangenomeâ71Updated 5 years ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).â19Updated 7 years ago
- PiGx SARS-CoV-2 wastewater sequencing pipelineâ18Updated 2 years ago
- Highly sensitive pathogen detectionâ12Updated 5 years ago
- Prediction fitness of leaves on a genealogical treeâ12Updated 10 years ago
- A Generative Pre-Trained Transformer Package for Pangenomesâ53Updated 5 months ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized fâŚâ14Updated 2 years ago
- AMBER: Assessment of Metagenome BinnERsâ30Updated 9 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS readsâ25Updated 2 years ago
- Generic human DNA variant annotation pipelineâ59Updated last year
- A tool for computing the coding potential of RNA transcript sequences using deep learning classification modelâ55Updated 3 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing dataâ31Updated 5 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq dataâ25Updated 5 months ago