Alternatives and similar repositories for ViraMiner

Users that are interested in ViraMiner are comparing it to the libraries listed below

• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆32Updated 6 years ago
• alvinxhan / Phydelity
  Inference of putative transmission phylogenetic clusters
  ☆12Updated 5 years ago
• leylabmpi / DeepMAsED
  Deep learning for Metagenome Assembly Error Detection
  ☆25Updated 4 years ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆34Updated 2 years ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 4 years ago
• pepebonet / DeepMP
  DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data
  ☆27Updated 3 years ago
• mblstamps / stamps2022
  Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA
  ☆22Updated 3 years ago
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆35Updated last year
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year
• CAMI-challenge / AMBER
  AMBER: Assessment of Metagenome BinnERs
  ☆31Updated 10 months ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated 2 years ago
• MetaSUB / MetaSUB_CAP
  A comprehensive pipeline for short read metagenomic data
  ☆25Updated 5 years ago
• MicrobeLab / DeepMicrobes
  DeepMicrobes: taxonomic classification for metagenomics with deep learning
  ☆101Updated 3 years ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆25Updated 2 weeks ago
• BIMSBbioinfo / pigx_sars-cov-2
  PiGx SARS-CoV-2 wastewater sequencing pipeline
  ☆18Updated 2 years ago
• dcdanko / MD2
  MicrobeDirectory 2.0
  ☆22Updated 5 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆22Updated 3 years ago
• crazyinter / Seq2Vec
  a novel encoding method for viral identification in metagenomics
  ☆15Updated 2 years ago
• GenomicsAotearoa / Kakapo
  Scripts and code for Kākāpō genomic data
  ☆14Updated 2 years ago
• foerstner-lab / READemption
  A pipeline for the computational evaluation of RNA-Seq data
  ☆39Updated last year
• apcamargo / RNAsamba
  A tool for computing the coding potential of RNA transcript sequences using deep learning classification model
  ☆55Updated 3 years ago
• timkahlke / BASTA
  Basic Sequence Taxonomy Annotator
  ☆44Updated last year
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆17Updated 7 years ago
• RKMlab / perf
  PERF is an Exhaustive Repeat Finder
  ☆34Updated 4 years ago
• sanger-pathogens / mlst_check
  Multilocus sequence typing by blast using the schemes from PubMLST
  ☆30Updated 3 years ago
• meren / BLAST-filtering-pipeline
  A very simple BLAST filtering pipeline
  ☆18Updated 11 years ago
• rrwick / Small-plasmid-Nanopore
  ☆13Updated 3 years ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 7 years ago
• NCBI-Hackathons / MetagenomicAntibioticResistance
  NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes
  ☆22Updated 6 years ago
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆53Updated 6 months ago