Alternatives and similar repositories for ViraMiner

Users that are interested in ViraMiner are comparing it to the libraries listed below

• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆34Updated last year
• alvinxhan / Phydelity
  Inference of putative transmission phylogenetic clusters
  ☆11Updated 4 years ago
• mblstamps / stamps2022
  Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA
  ☆22Updated 3 years ago
• phac-nml / biohansel
  Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
  ☆28Updated 8 months ago
• leylabmpi / DeepMAsED
  Deep learning for Metagenome Assembly Error Detection
  ☆26Updated 4 years ago
• timkahlke / BASTA
  Basic Sequence Taxonomy Annotator
  ☆42Updated last year
• Golob-Minot / geneshot
  ☆29Updated last year
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆58Updated 4 years ago
• widdowquinn / find_differential_primers
  Code for design of diagnostic PCR primers, and metabarcoding markers.
  ☆62Updated last year
• crazyinter / Seq2Vec
  a novel encoding method for viral identification in metagenomics
  ☆15Updated last year
• sanger-pathogens / plasmidtron
  Assembling the cause of phenotypes and genotypes from NGS data
  ☆29Updated 5 years ago
• bhattlab / StrainSifter
  A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).
  ☆20Updated 7 years ago
• CAMI-challenge / AMBER
  AMBER: Assessment of Metagenome BinnERs
  ☆32Updated 7 months ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated 2 years ago
• NCBI-Hackathons / MetagenomicAntibioticResistance
  NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes
  ☆22Updated 6 years ago
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆52Updated 3 months ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 3 years ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆23Updated 2 months ago
• dcdanko / MD2
  MicrobeDirectory 2.0
  ☆22Updated 5 years ago
• dib-lab / genome-grist
  map Illumina metagenomes to genomes!
  ☆39Updated last week
• kaanb93 / q2-krona
  Implementation of Krona to QIIME2
  ☆16Updated last year
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆28Updated 6 years ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last year
• BIMSBbioinfo / pigx_sars-cov-2
  PiGx SARS-CoV-2 wastewater sequencing pipeline
  ☆18Updated 2 years ago
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆18Updated 7 years ago
• Gabaldonlab / EvolClust
  Evolcust retrieves groups of genes that appear clustered together in groups of species
  ☆16Updated 2 years ago
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆48Updated 2 years ago
• MetaSUB / MetaSUB_CAP
  A comprehensive pipeline for short read metagenomic data
  ☆24Updated 5 years ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 9 months ago
• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆31Updated 6 years ago