Alternatives and similar repositories for ViraMiner

Users that are interested in ViraMiner are comparing it to the libraries listed below

• leylabmpi / DeepMAsED
  Deep learning for Metagenome Assembly Error Detection
  ☆25Updated 5 years ago
• CAMI-challenge / AMBER
  AMBER: Assessment of Metagenome BinnERs
  ☆33Updated last month
• MetaSUB / MetaSUB_CAP
  A comprehensive pipeline for short read metagenomic data
  ☆24Updated 5 years ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated 2 years ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆59Updated 5 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year
• HUST-NingKang-Lab / MGM
  MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.
  ☆46Updated 2 weeks ago
• Golob-Minot / geneshot
  ☆29Updated last year
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 4 years ago
• apcamargo / RNAsamba
  A tool for computing the coding potential of RNA transcript sequences using deep learning classification model
  ☆57Updated 3 years ago
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆53Updated 8 months ago
• dcdanko / MD2
  MicrobeDirectory 2.0
  ☆22Updated 5 years ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆61Updated 11 months ago
• mblstamps / stamps2022
  Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA
  ☆22Updated 3 years ago
• bhattlab / StrainSifter
  A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).
  ☆19Updated 7 years ago
• phac-nml / biohansel
  Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
  ☆28Updated last year
• MicrobeLab / DeepMicrobes
  DeepMicrobes: taxonomic classification for metagenomics with deep learning
  ☆104Updated 3 years ago
• SegataLab / metaml
  ☆34Updated last year
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆50Updated 9 months ago
• BIMSBbioinfo / pigx_sars-cov-2
  PiGx SARS-CoV-2 wastewater sequencing pipeline
  ☆18Updated 2 years ago
• alvinxhan / Phydelity
  Inference of putative transmission phylogenetic clusters
  ☆12Updated 5 years ago
• dib-lab / genome-grist
  map Illumina metagenomes to genomes!
  ☆38Updated 2 weeks ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆71Updated 2 months ago
• pnnl / mercat
  MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
  ☆18Updated 3 years ago
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆50Updated 2 years ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆22Updated last year
• bioinfo-ut / PhenotypeSeeker
  Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains
  ☆21Updated last month
• timkahlke / BASTA
  Basic Sequence Taxonomy Annotator
  ☆44Updated last year
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆17Updated 7 years ago
• Psy-Fer / interARTIC
  InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..
  ☆31Updated 2 years ago