Alternatives and similar repositories for VirFinder

Users that are interested in VirFinder are comparing it to the libraries listed below

• simroux / VirSorter
  Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)
  ☆102Updated 4 years ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆124Updated last year
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆118Updated 2 months ago
• cmks / DAS_Tool
  DAS Tool
  ☆156Updated last year
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆154Updated 2 months ago
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆174Updated 3 months ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆140Updated last year
• AnantharamanLab / VIBRANT
  Virus Identification By iteRative ANnoTation
  ☆171Updated last year
• katholt / srst2
  Short Read Sequence Typing for Bacterial Pathogens
  ☆138Updated 4 years ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆138Updated 3 years ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆77Updated 2 years ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆219Updated 3 weeks ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆202Updated last year
• jessieren / DeepVirFinder
  Identifying viruses from metagenomic data by deep learning
  ☆145Updated 2 months ago
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆63Updated 2 years ago
• BinPro / CONCOCT
  Clustering cONtigs with COverage and ComposiTion
  ☆132Updated 5 years ago
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆88Updated last year
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆140Updated 3 weeks ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆115Updated last year
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆109Updated 4 months ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆153Updated 4 months ago
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆157Updated last year
• qiyunlab / HGTector
  HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
  ☆136Updated last year
• genomicsITER / NanoCLUST
  NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
  ☆111Updated last year
• wwood / singlem
  Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes
  ☆161Updated last week
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆150Updated 5 months ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆222Updated 5 months ago
• AnantharamanLab / METABOLIC
  A scalable high-throughput metabolic and biogeochemical functional trait profiler
  ☆201Updated 7 months ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆141Updated last year
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆82Updated last month