Alternatives and similar repositories for VirFinder

Users that are interested in VirFinder are comparing it to the libraries listed below

• simroux / VirSorter
  Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)
  ☆104Updated 4 years ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆137Updated last year
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆116Updated 3 months ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆121Updated last year
• cmks / DAS_Tool
  DAS Tool
  ☆150Updated last year
• jessieren / DeepVirFinder
  Identifying viruses from metagenomic data by deep learning
  ☆139Updated 3 weeks ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆197Updated last year
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆136Updated 2 years ago
• smaegol / PlasFlow
  Software for prediction of plasmid sequences in metagenomic assemblies
  ☆102Updated 3 years ago
• tseemann / nullarbor
  "Reads to report" for public health and clinical microbiology
  ☆140Updated last year
• klebgenomics / Kleborate
  ☆125Updated last week
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆128Updated last month
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆214Updated 2 months ago
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆116Updated 3 weeks ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆152Updated 2 months ago
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆161Updated last month
• microgenomics / tutorials
  In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…
  ☆82Updated 7 years ago
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆77Updated 4 months ago
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆173Updated last month
• donovan-h-parks / STAMP
  Statistical Analysis of Metagenomic Profiles
  ☆93Updated 5 years ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆114Updated last year
• caitiecollins / treeWAS
  treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes
  ☆103Updated 4 months ago
• BinPro / CONCOCT
  Clustering cONtigs with COverage and ComposiTion
  ☆131Updated 5 years ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆202Updated 10 months ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆72Updated last year
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆147Updated this week
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆213Updated 2 weeks ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆85Updated last month
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆62Updated last year
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆119Updated last year