jessieren / VirFinderLinks
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
☆138Updated 5 years ago
Alternatives and similar repositories for VirFinder
Users that are interested in VirFinder are comparing it to the libraries listed below
Sorting:
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Updated 5 years ago
 - DAS Tool☆159Updated last year
 - Clustering cONtigs with COverage and ComposiTion☆134Updated 5 years ago
 - A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
 - Identifying viruses from metagenomic data by deep learning☆147Updated 5 months ago
 - GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆120Updated last month
 - Pairwise SNP distance matrix from a FASTA sequence alignment☆142Updated last year
 - Bioinformatics program inStrain☆177Updated 5 months ago
 - Virus Identification By iteRative ANnoTation☆174Updated last year
 - motus - a tool for marker gene-based OTU (mOTU) profiling☆161Updated last year
 - Pan-genome wide association studies☆204Updated last year
 - Short Read Sequence Typing for Bacterial Pathogens☆139Updated 4 years ago
 - A user-friendly workflow for phylogenomics☆221Updated last week
 - All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆78Updated 2 years ago
 - Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆158Updated 4 months ago
 - Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆167Updated last month
 - Metatranscriptomics Tutorial☆64Updated 2 years ago
 - VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated last week
 - Processing pipeline for pan-genome visulization and exploration☆141Updated 2 years ago
 - Pipeline for metabolic annotation of microbial genomes☆150Updated 7 months ago
 - phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated 2 years ago
 - Convert various sequence formats to FASTA☆138Updated 3 years ago
 - Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆153Updated 6 months ago
 - MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆159Updated 6 months ago
 - Making whole bacterial genome sequencing data analysis easy☆113Updated 6 months ago
 - ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆258Updated 3 weeks ago
 - bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆123Updated 2 weeks ago
 - Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
 - treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆104Updated 8 months ago
 - ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆116Updated last year