Unified Human Gut Virome Catalog
☆41Nov 10, 2025Updated 5 months ago
Alternatives and similar repositories for UHGV
Users that are interested in UHGV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Supporting code for uncultivated gut virus manuscript☆80Jul 17, 2023Updated 2 years ago
- The viral taxonomic assignment pipeline☆43Feb 5, 2026Updated 2 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆22Nov 25, 2025Updated 4 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Discover and annotate the virome☆61Feb 11, 2026Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- ☆13Feb 29, 2024Updated 2 years ago
- ☆34Oct 6, 2025Updated 6 months ago
- geNomad: Identification of mobile genetic elements☆301Mar 29, 2026Updated 2 weeks ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆80Apr 16, 2025Updated 11 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆181Mar 17, 2026Updated 3 weeks ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Locate antiviral defence systems in prokaryotic genomes☆71Oct 22, 2024Updated last year
- Simple Python interface to CoverM's fast coverage estimation functions☆10Dec 20, 2024Updated last year
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- More scalable dereplication for metagenome assembled genomes☆79Mar 8, 2026Updated last month
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆57Mar 27, 2026Updated 2 weeks ago
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆49Jan 26, 2026Updated 2 months ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆18Feb 3, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomes☆45Jan 24, 2025Updated last year
- ☆19Jan 14, 2024Updated 2 years ago
- De novo VIral Genome Annotator☆24Jan 11, 2026Updated 3 months ago
- Precise host read removal☆119Mar 28, 2026Updated 2 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆248Oct 12, 2025Updated 6 months ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Apr 6, 2026Updated last week
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 4 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆42Sep 3, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- vaginal microbiota☆13Jan 21, 2025Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆148Updated this week
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆46May 8, 2024Updated last year
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆108May 23, 2025Updated 10 months ago
- Discovery of conserved gene clusters in multiple genomes☆128Jan 16, 2026Updated 2 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆59Jun 4, 2025Updated 10 months ago
- Phage Annotation using Protein Structures☆156Updated this week