Unified Human Gut Virome Catalog
☆41Nov 10, 2025Updated 3 months ago
Alternatives and similar repositories for UHGV
Users that are interested in UHGV are comparing it to the libraries listed below
Sorting:
- Supporting code for uncultivated gut virus manuscript☆77Jul 17, 2023Updated 2 years ago
- The viral taxonomic assignment pipeline☆42Feb 5, 2026Updated last month
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Discover and annotate the virome☆59Feb 11, 2026Updated 3 weeks ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 3 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆21Nov 25, 2025Updated 3 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- Locate antiviral defence systems in prokaryotic genomes☆68Oct 22, 2024Updated last year
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- ☆13Feb 29, 2024Updated 2 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 2 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆178Jan 7, 2026Updated last month
- geNomad: Identification of mobile genetic elements☆291Nov 10, 2025Updated 3 months ago
- De novo VIral Genome Annotator☆24Jan 11, 2026Updated last month
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆78Apr 16, 2025Updated 10 months ago
- ☆34Oct 6, 2025Updated 5 months ago
- More scalable dereplication for metagenome assembled genomes☆78Dec 17, 2025Updated 2 months ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆17Feb 3, 2026Updated last month
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated 2 weeks ago
- Precise host read removal☆117Sep 4, 2025Updated 6 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆106May 23, 2025Updated 9 months ago
- vaginal microbiota☆12Jan 21, 2025Updated last year
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- Python CLI for alignment-free genomics.☆13Feb 11, 2026Updated 3 weeks ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆58Jun 4, 2025Updated 9 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆236Oct 12, 2025Updated 4 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 10 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Jan 23, 2026Updated last month
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Mar 25, 2025Updated 11 months ago
- Simple Python interface to CoverM's fast coverage estimation functions☆10Dec 20, 2024Updated last year
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆147Updated this week
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆46Jan 26, 2026Updated last month
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomes☆45Jan 24, 2025Updated last year
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago