snayfach / UHGV
Unified Human Gut Virome Catalog
☆27Updated 8 months ago
Alternatives and similar repositories for UHGV:
Users that are interested in UHGV are comparing it to the libraries listed below
- ☆29Updated last month
- ☆31Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 8 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- A simple program to classify the lifestyle of phages.☆17Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆34Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆36Updated last year
- Prophage Activity Estimator☆26Updated 9 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 2 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 7 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated 11 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆19Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆26Updated last week
- Discover and annotate the virome☆39Updated 5 months ago
- KEGG Module Evaluation Tool☆29Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆23Updated last month
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- Phage-Host Interaction Search Tool☆27Updated 8 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 3 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 5 months ago
- ☆19Updated 3 years ago
- Bacterial GWAS analysis☆37Updated 2 weeks ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 3 months ago
- ☆51Updated last year
- Tools to analyze the differences and similarities between CRISPR arrays☆10Updated 3 months ago
- MAG Circularization Method☆33Updated 2 years ago