linsalrob / ProphagePredictionComparisonsLinks
Comparisons of multiple different prophage predictions
☆26Updated 3 years ago
Alternatives and similar repositories for ProphagePredictionComparisons
Users that are interested in ProphagePredictionComparisons are comparing it to the libraries listed below
Sorting:
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆34Updated last week
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Prophage Activity Estimator☆26Updated last year
- ☆31Updated 7 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆75Updated 2 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- ☆33Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆52Updated 3 months ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- More scalable dereplication for metagenome assembled genomes☆68Updated this week
- Unified Human Gut Virome Catalog☆36Updated last week
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated last week
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated this week
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- ☆24Updated 6 years ago
- ☆20Updated last year
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆16Updated 3 months ago
- Predict prokaryotic host for phage metagenomic sequences☆51Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆60Updated 5 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- Prediction of prophages from bacterial genomes☆79Updated 3 months ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆16Updated last year
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆76Updated last year
- KEGG Module Evaluation Tool☆31Updated last year