linsalrob / ProphagePredictionComparisons
Comparisons of multiple different prophage predictions
☆25Updated 2 years ago
Alternatives and similar repositories for ProphagePredictionComparisons:
Users that are interested in ProphagePredictionComparisons are comparing it to the libraries listed below
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆26Updated 2 weeks ago
- ☆29Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 8 months ago
- Unified Human Gut Virome Catalog☆27Updated 8 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 11 months ago
- A python library for predicting phage lifestyle based on genome sequence☆36Updated last year
- Prophage Activity Estimator☆26Updated 9 months ago
- ☆31Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated 2 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆20Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆47Updated 3 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆58Updated 3 months ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆14Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 3 weeks ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆17Updated last year
- PHANOTATE: a tool to annotate phage genomes.☆72Updated 3 months ago
- Phage prediction tools☆15Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated this week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆37Updated 3 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 5 months ago
- IslandPath standalone software☆31Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆23Updated 2 months ago