linsalrob / ProphagePredictionComparisons
Comparisons of multiple different prophage predictions
☆24Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for ProphagePredictionComparisons
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆25Updated last week
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- ☆23Updated 9 months ago
- ☆30Updated 11 months ago
- Prophage Activity Estimator☆26Updated 5 months ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆36Updated last month
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆20Updated last month
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 2 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 7 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆51Updated 6 months ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆41Updated 4 months ago
- A simple program to classify the lifestyle of phages.☆16Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆19Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆29Updated 2 years ago
- ☆24Updated 2 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆39Updated 3 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆32Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆28Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated 2 weeks ago
- Phage prediction tools☆15Updated last year
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆16Updated 5 months ago
- ☆17Updated 2 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 8 months ago
- IslandPath standalone software☆31Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated 3 weeks ago
- Taxonomic classification of viruses at Order and Family level☆18Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago