Alternatives and similar repositories for Jaeger:

Users that are interested in Jaeger are comparing it to the libraries listed below

• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
  ☆44Updated last week
• CristinaMoraru / VIRIDIC
  VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.
  ☆14Updated last year
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆48Updated 8 months ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆27Updated 8 months ago
• apcamargo / ictv-mmseqs2-protein-database
  ☆29Updated last month
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 9 months ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆32Updated 3 years ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆35Updated last year
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆31Updated last year
• tseemann / phastaf
  Identify phage regions in bacterial genomes for masking purposes
  ☆30Updated 5 years ago
• rnajena / viralclust
  Small pipeline to cluster viral genomes based on their k-mer content. WiP
  ☆16Updated last month
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆38Updated 5 months ago
• brinkmanlab / islandpath
  IslandPath standalone software
  ☆31Updated last year
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆26Updated 4 months ago
• linsalrob / ProphagePredictionComparisons
  Comparisons of multiple different prophage predictions
  ☆25Updated 2 years ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆34Updated 3 weeks ago
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆31Updated 2 years ago
• wandreopoulos / deeplasmid
  ☆20Updated 6 months ago
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆60Updated 2 months ago
• xthua / bacant
  This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
  ☆20Updated last year
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆39Updated 5 months ago
• lauriebelch / SOCfinder
  ☆16Updated 3 months ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆27Updated last year
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆22Updated last year
• deprekate / PHACTS
  A simple program to classify the lifestyle of phages.
  ☆17Updated last year
• aldertzomer / RFPlasmid
  Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
  ☆48Updated 11 months ago
• lazzarigioele / graphanalyzer
  This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…
  ☆18Updated last year
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆23Updated 11 months ago
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆37Updated last week
• chg60 / DEPhT
  Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
  ☆20Updated 3 months ago