Kuanhao-Chao / Wheeler_Graph_ToolkitLinks
🔎 wheeler graph recognition algorithm, visualization and generation
☆19Updated 2 years ago
Alternatives and similar repositories for Wheeler_Graph_Toolkit
Users that are interested in Wheeler_Graph_Toolkit are comparing it to the libraries listed below
Sorting:
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated last month
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 6 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 2 years ago
- Iterative error correction of long reads☆13Updated 2 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- The MafFilter genome alignment processor☆19Updated 2 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 7 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- ☆24Updated 7 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 10 months ago
- Long-read aligner to pangenome graphs☆26Updated last year
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 weeks ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated 3 months ago
- ☆12Updated 4 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Reference bias measuring toolkit☆18Updated 3 months ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated last year
- chloroplast genome assembly using long reads data☆13Updated last week
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- ☆21Updated 3 weeks ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 8 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 9 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 9 months ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 7 months ago
- Genome Assembly 102☆14Updated 2 months ago
- ☆20Updated last year
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago