🔎 wheeler graph recognition algorithm, visualization and generation
☆21Jul 7, 2023Updated 2 years ago
Alternatives and similar repositories for Wheeler_Graph_Toolkit
Users that are interested in Wheeler_Graph_Toolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆12Oct 24, 2022Updated 3 years ago
- 👶🏼🍼 a RPG game modified from a unity 2D game kit☆22Sep 20, 2023Updated 2 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆61Feb 26, 2025Updated last year
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆43Dec 11, 2025Updated 4 months ago
- 📊 An R package of RNA-seq workflow☆16May 4, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆123Feb 24, 2026Updated 2 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- ☆15Nov 30, 2023Updated 2 years ago
- functions to analyse sanger sequencing reads in R☆104Updated this week
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆13Dec 26, 2025Updated 4 months ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- Programs implementing the trio-binning genome assembly method☆21Nov 22, 2023Updated 2 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆130Apr 17, 2026Updated 2 weeks ago
- chloroplast genome assembly using long reads data☆16Jul 8, 2025Updated 9 months ago
- ☆11Feb 21, 2023Updated 3 years ago
- BWT tunneling☆12Feb 4, 2018Updated 8 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆26Jan 21, 2026Updated 3 months ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- Reference bias measuring toolkit☆20Mar 12, 2026Updated last month
- CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning☆11Oct 28, 2022Updated 3 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- The MafFilter genome alignment processor☆19Apr 10, 2026Updated 3 weeks ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 10 months ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Efficient, parallel compression for terabyte-scale data☆62Feb 25, 2026Updated 2 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36Apr 28, 2026Updated last week
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 11 months ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22May 29, 2018Updated 7 years ago