Alternatives and similar repositories for Wheeler_Graph_Toolkit:

Users that are interested in Wheeler_Graph_Toolkit are comparing it to the libraries listed below

• hitbc / gcSV
  ☆17Updated 2 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 10 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated 10 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆29Updated 7 months ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated 2 years ago
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 6 months ago
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated last year
• marbl / training
  Genome Assembly 102
  ☆14Updated this week
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 5 months ago
• Gaius-Augustus / GUSHR
  Generating UTRs from SHort Reads
  ☆12Updated 4 years ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆23Updated 2 months ago
• at-cg / RAFT
  ☆23Updated 8 months ago
• uio-bmi / NucBreak
  Location of structural errors in a genome assembly and structural variations between a pair of genomes
  ☆11Updated 5 years ago
• maojanlin / biastools
  Reference bias measuring toolkit
  ☆18Updated last week
• PacificBiosciences / actc
  Align subreads to ccs reads
  ☆13Updated last year
• davidebolo1993 / cosigt
  ☆17Updated this week
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆24Updated last week
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• lh3 / pubLRasm
  ☆17Updated 4 years ago
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆16Updated 2 months ago
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆17Updated 2 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆36Updated last year
• pdishuck / GAVISUNK
  Genome Assembly Validation via Inter-SUNK distances in ONT reads
  ☆12Updated 2 years ago
• tprodanov / locityper
  Targeted genotyper for complex polymorphic genes
  ☆20Updated last week
• marbl / rukki
  Extracting paths from assembly graphs
  ☆23Updated last year
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated 8 months ago