π wheeler graph recognition algorithm, visualization and generation
β21Jul 7, 2023Updated 2 years ago
Alternatives and similar repositories for Wheeler_Graph_Toolkit
Users that are interested in Wheeler_Graph_Toolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gapless, reference-quality Southern Han Chinese genome assembly and annotationβ12Oct 24, 2022Updated 3 years ago
- πΆπΌπΌ a RPG game modified from a unity 2D game kitβ22Sep 20, 2023Updated 2 years ago
- βοΈ Deep learning-based splice site predictor that improves spliced alignmentsβ61Feb 26, 2025Updated last year
- π€ Openβsource deep-learning-based spliceβsite predictor that decodes splicing patterns across speciesβ46Updated this week
- π An R package of RNA-seq workflowβ16May 4, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- π LiftOn: Accurate annotation mapping for GFF/GTF across assembliesβ124May 4, 2026Updated last month
- your friendly pangenome graph genotyperβ10Feb 6, 2023Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq dataβ17Dec 13, 2024Updated last year
- convert CHAIN format to PAF formatβ15Dec 17, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkitβ16Sep 10, 2025Updated 9 months ago
- β15Nov 30, 2023Updated 2 years ago
- functions to analyse sanger sequencing reads in Rβ104May 6, 2026Updated last month
- CPANG19 - Computational PANGenomics (2019)β12May 7, 2020Updated 6 years ago
- Iterative error correction of long readsβ13Dec 9, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting β’ AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- β13Dec 26, 2025Updated 5 months ago
- Population genetics analysis on VGβ17Apr 22, 2021Updated 5 years ago
- Programs implementing the trio-binning genome assembly methodβ21Nov 22, 2023Updated 2 years ago
- reference free variant assemblyβ34Jul 14, 2023Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomesβ132Apr 17, 2026Updated last month
- chloroplast genome assembly using long reads dataβ17Jul 8, 2025Updated 11 months ago
- β11Feb 21, 2023Updated 3 years ago
- BWT tunnelingβ12Feb 4, 2018Updated 8 years ago
- Efficient low-divergence mapping of long reads in minimizer spaceβ69Oct 7, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- run-length BWT tools for genomic sequencesβ19May 19, 2022Updated 4 years ago
- convert variation graph alignments to coverage maps over nodesβ27Jan 21, 2026Updated 4 months ago
- Shared k-mer content between two genomesβ18Jun 21, 2023Updated 2 years ago
- Automated optimisation of de-novo transcriptome assemblyβ25Nov 11, 2015Updated 10 years ago
- Reference bias measuring toolkitβ20Mar 12, 2026Updated 3 months ago
- CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learningβ11Oct 28, 2022Updated 3 years ago
- De novo genome assembler.β12Jul 30, 2018Updated 7 years ago
- The MafFilter genome alignment processorβ19Apr 10, 2026Updated 2 months ago
- Homologizer: phasing gene copies into polyploid subgenomesβ13Feb 3, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- use variant nesting information to flter overlapping sites from vg deconstruct outputβ33Jun 12, 2025Updated last year
- Scaffolding with assembly likelihood optimizationβ21Dec 14, 2020Updated 5 years ago
- Efficient, parallel compression for terabyte-scale dataβ63Feb 25, 2026Updated 3 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functionsβ38Apr 28, 2026Updated last month
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.β10Jun 6, 2025Updated last year
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Dataβ19Feb 15, 2022Updated 4 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.β23May 29, 2018Updated 8 years ago