Alternatives and similar repositories for Wheeler_Graph_Toolkit

Users that are interested in Wheeler_Graph_Toolkit are comparing it to the libraries listed below

• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆13Updated last year
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆26Updated last year
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Updated 2 years ago
• LeilyR / Multi-genome-Reference
  A program to generate a graph which presents a simplified representation of several full length genomes
  ☆13Updated 7 years ago
• ban-m / jtk
  JTK -- a regional diploid genome assembler
  ☆25Updated last year
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆11Updated last year
• uio-bmi / NucBreak
  Location of structural errors in a genome assembly and structural variations between a pair of genomes
  ☆11Updated 6 years ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆19Updated 2 weeks ago
• Gaius-Augustus / GUSHR
  Generating UTRs from SHort Reads
  ☆12Updated 5 years ago
• wf8 / homologizer
  Homologizer: phasing gene copies into polyploid subgenomes
  ☆11Updated 3 years ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆20Updated last year
• hillerlab / IterativeErrorCorrection
  Iterative error correction of long reads
  ☆13Updated 3 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆23Updated last year
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆15Updated 4 months ago
• Flavia95 / VGpop
  Population genetics analysis on VG
  ☆16Updated 4 years ago
• AndreaGuarracino / chain2paf
  convert CHAIN format to PAF format
  ☆15Updated last year
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆11Updated 6 years ago
• ktan8 / nanopore_telomere_basecall
  ☆15Updated 2 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated last month
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆29Updated last year
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆10Updated 2 months ago
• marbl / training
  Genome Assembly 102
  ☆17Updated 8 months ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 4 years ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆26Updated 3 weeks ago
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆28Updated 3 months ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 7 months ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 3 weeks ago
• yanboANU / Kmer2SNP
  ☆26Updated 4 years ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated last year
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆19Updated 5 years ago