happywithxpl / GeneMinerLinks
GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data
☆12Updated last year
Alternatives and similar repositories for GeneMiner
Users that are interested in GeneMiner are comparing it to the libraries listed below
Sorting:
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆10Updated 5 months ago
- ☆16Updated 2 years ago
- Diploid genome assembly analysis tools☆14Updated last year
- ☆12Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 8 months ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆11Updated 2 years ago
- ☆16Updated last year
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆14Updated 6 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Updated last year
- ☆14Updated last month
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated 3 weeks ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Telomere compliment tools☆20Updated last week
- Estimating gene family turnover rates by likelihood-based methods☆12Updated 5 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- chloroplast genome assembly using long reads data☆13Updated 4 months ago
- ☆28Updated last year
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated 7 months ago
- plot genome alignment synteny☆21Updated 5 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Updated 2 months ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆10Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 2 months ago
- SINE annotation tool for plant genomes☆18Updated last year