likui345 / PGA
☆15Updated 3 years ago
Alternatives and similar repositories for PGA:
Users that are interested in PGA are comparing it to the libraries listed below
- Centromics: visualing centromeres with multiple omics data☆22Updated last month
- ☆20Updated 8 months ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 11 months ago
- ☆27Updated 2 weeks ago
- ☆25Updated 3 years ago
- ☆29Updated 7 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆27Updated last month
- a Semi-automated pipeline for assembling T2T genome☆16Updated this week
- Centromics: visualing centromeres with multiple omics data☆18Updated last year
- HiCAT new project☆27Updated last year
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆24Updated last year
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- This is a method to find telomeres and centromeres in plants.☆40Updated last year
- ☆22Updated last year
- ☆23Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆28Updated 2 months ago
- ☆40Updated last year
- ☆29Updated 3 months ago
- ☆27Updated 2 years ago
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Updated 2 months ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Genome haplotype assembly and assessment method☆12Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆44Updated last year
- A tool for performing collinearity-incorporating homology inference☆31Updated last year
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆38Updated 3 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆27Updated 4 months ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆16Updated 5 months ago
- Scripts that used in our chicken T2T manuscript.☆19Updated last year