likui345 / PGAView external linksLinks
☆16Jul 25, 2021Updated 4 years ago
Alternatives and similar repositories for PGA
Users that are interested in PGA are comparing it to the libraries listed below
Sorting:
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- This is a method to find telomeres and centromeres in plants.☆42Jun 17, 2023Updated 2 years ago
- ☆27Oct 20, 2023Updated 2 years ago
- ☆28Mar 4, 2022Updated 3 years ago
- The codes to assemble two sorghum cultivars☆10May 11, 2024Updated last year
- Dynamic Elongation of a Genome Assembly Path☆25Dec 15, 2025Updated 2 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- a gap-filling tools of genome in complex region.☆24Dec 30, 2025Updated last month
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- use long sequenced reads to close gaps in assemblies☆40Sep 4, 2018Updated 7 years ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆12Feb 22, 2024Updated last year
- ☆20Updated this week
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Feb 9, 2026Updated last week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆164Oct 29, 2025Updated 3 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆35Dec 24, 2025Updated last month
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated last year
- ☆15Aug 6, 2025Updated 6 months ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated 9 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 4 months ago
- ☆29Apr 16, 2023Updated 2 years ago
- ☆16Apr 3, 2023Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- HiCAT new project☆31May 18, 2025Updated 8 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Nov 9, 2025Updated 3 months ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Nov 5, 2025Updated 3 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 3 months ago
- ☆15Jan 19, 2022Updated 4 years ago
- ☆29Feb 5, 2026Updated last week
- ☆17Jan 13, 2024Updated 2 years ago
- Graph-based Sequence Assembly Toolkit☆22Nov 22, 2024Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- ☆24Apr 22, 2025Updated 9 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- The tools are used for displaying hic signal of genome☆24Jan 4, 2021Updated 5 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Feb 27, 2020Updated 5 years ago