Alternatives and similar repositories for PGA

Users that are interested in PGA are comparing it to the libraries listed below

• JM-SONG / GenomeSyn
  ☆26Updated 3 years ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆22Updated last year
• tangerzhang / calc_switchErr
  ☆30Updated 8 months ago
• zhangrengang / subgenome_phasing_example
  An Example of Subgenome Phasing for Complex Allopolyploidy
  ☆13Updated last month
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆24Updated 9 months ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆32Updated last month
• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated last year
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆20Updated last year
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆24Updated last month
• Argonum-Clever2 / mike
  ☆32Updated 8 months ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆42Updated 2 years ago
• rpianezza / GenomeDelta
  Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…
  ☆17Updated last year
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated 2 years ago
• xjtu-omics / HiCAT
  HiCAT new project
  ☆29Updated 6 months ago
• Immortal2333 / Haplotype_Genome_Assembly
  Genome haplotype assembly and assessment method
  ☆12Updated 2 years ago
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆35Updated last month
• panlab-bioinfo / TRFill
  a gap-filling tools of genome in complex region.
  ☆21Updated 3 months ago
• simon19891216 / CentIER
  ☆40Updated 4 months ago
• NotebookOFXiaoMing / SuperPangenomeofGrapevines
  ☆20Updated last year
• baozg / phased-assembly-check
  ☆31Updated 11 months ago
• unavailable-2374 / Pan_TE
  PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes
  ☆24Updated last month
• ShiuLab / PseudogenePipeline
  ☆41Updated 2 years ago
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆31Updated 5 months ago
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• ChuanzhengWei / sorghum_T2T
  The codes to assemble two sorghum cultivars
  ☆10Updated last year
• unavailable-2374 / Genome-Wide-Annotation-Pipeline
  This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.
  ☆29Updated last year
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆13Updated 6 years ago
• lardo / khaper
  ☆28Updated 3 years ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆18Updated 2 years ago
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 7 years ago