hwc2021 / GSATLinks
Graph-based Sequence Assembly Toolkit
☆22Updated 11 months ago
Alternatives and similar repositories for GSAT
Users that are interested in GSAT are comparing it to the libraries listed below
Sorting:
- a Semi-automated pipeline for assembling T2T genome☆24Updated last month
- An efficient assembly tool for plant mitochondrial genome☆64Updated last year
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 7 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆42Updated last month
- Genome haplotype assembly and assessment method☆12Updated last year
- ☆41Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- An Example of Subgenome Phasing for Complex Allopolyploidy☆13Updated last week
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆27Updated last year
- a gap-filling tools of genome in complex region.☆20Updated 3 months ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated 10 months ago
- HiCAT new project☆29Updated 6 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- ☆45Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- ☆24Updated last week
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 8 months ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆34Updated 2 months ago
- ☆39Updated 3 months ago
- ☆21Updated 2 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- BAsh-Based Automated Parallel Positive selection Analysis☆16Updated last month
- ☆19Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 8 months ago
- ☆32Updated 8 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆39Updated last year
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆33Updated 2 years ago