Alternatives and similar repositories for GSAT:

Users that are interested in GSAT are comparing it to the libraries listed below

• bichangwei / PMAT
  An efficient assembly tool for plant mitochondrial genome
  ☆60Updated 9 months ago
• unavailable-2374 / Genome-Wide-Annotation-Pipeline
  This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.
  ☆21Updated last year
• moshi4 / CafePlotter
  A tool for plotting CAFE5 gene family expansion/contraction result
  ☆27Updated last year
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆38Updated last year
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆37Updated this week
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆37Updated 5 months ago
• hewm2008 / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆38Updated 3 months ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆58Updated last month
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆46Updated 2 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 6 months ago
• YanCCscu / MEANGS
  MitoDNA extending assembler from NGS data
  ☆20Updated last year
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆21Updated this week
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆65Updated 3 years ago
• YuboZhangPKU / ERICA
  ☆18Updated last year
• ChenHuaLab / fastHaN
  fastHaN is a fast and scalable program for constructing haplotype networks for large samples
  ☆12Updated last year
• Longhui-Ren / Ancestral_Genome_Reconstruction
  Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
  ☆13Updated 6 years ago
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆17Updated last year
• JiaoLab2021 / EVG
  A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
  ☆37Updated 8 months ago
• yywyaoyaowu / SolEvo_PotatoDele
  Use hifi to assembly the Sol genome, and dissecting Sol evo
  ☆16Updated last year
• sc-zhang / AlleleFinder
  AlleleFinder is a tool for identifying allele genes from polyploid genome.
  ☆25Updated 2 months ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆42Updated 2 years ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated 9 months ago
• zhangfumin / domestication
  ☆17Updated 2 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆31Updated 11 months ago
• simon19891216 / CentIER
  ☆28Updated 6 months ago
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆34Updated last month
• ShiuLab / PseudogenePipeline
  ☆39Updated last year
• Joseph7e / MAKER-genome-annotations-tutorial
  Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support
  ☆21Updated last year
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆48Updated 5 years ago