hwc2021 / GSATLinks
Graph-based Sequence Assembly Toolkit
☆20Updated 7 months ago
Alternatives and similar repositories for GSAT
Users that are interested in GSAT are comparing it to the libraries listed below
Sorting:
- This is a method to find telomeres and centromeres in plants.☆40Updated 2 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆24Updated last year
- a Semi-automated pipeline for assembling T2T genome☆17Updated last month
- Centromics: visualing centromeres with multiple omics data☆18Updated last year
- ☆40Updated 2 years ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆30Updated 5 months ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆18Updated 2 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆28Updated last week
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆31Updated last year
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- An efficient assembly tool for plant mitochondrial genome☆62Updated last year
- ☆33Updated 9 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆41Updated 9 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆36Updated this week
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆34Updated 4 months ago
- Genome haplotype assembly and assessment method☆12Updated last year
- ☆30Updated 3 months ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- BAsh-Based Automated Parallel Positive selection Analysis☆15Updated 2 months ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated last month
- ☆25Updated 3 years ago
- ☆30Updated 5 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆39Updated 5 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆21Updated last week
- scripts used in Rice Pangenome Projects (Evolution).☆11Updated last year
- Centromics: visualing centromeres with multiple omics data☆22Updated 3 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆66Updated 4 years ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆14Updated 3 years ago