BGI-Qingdao / TGS-GapCloser2
A gap-closing software tool that uses long reads to enhance genome assembly.
☆11Updated last year
Alternatives and similar repositories for TGS-GapCloser2:
Users that are interested in TGS-GapCloser2 are comparing it to the libraries listed below
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Centromics: visualing centromeres with multiple omics data☆22Updated last month
- ☆27Updated 2 weeks ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 11 months ago
- ☆11Updated this week
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- ☆23Updated last year
- ☆29Updated 3 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- plot genome alignment synteny☆21Updated 4 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- ☆15Updated 2 years ago
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 5 months ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- ☆20Updated 8 months ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆28Updated 2 months ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆9Updated 2 months ago
- Genome alignment and synteny plots☆30Updated last year
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- ☆27Updated 2 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated 11 months ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆11Updated 2 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆16Updated 5 months ago