DyogenIBENS / AgoraLinks
Algorithm For Gene Order Reconstruction in Ancestors
☆77Updated 4 months ago
Alternatives and similar repositories for Agora
Users that are interested in Agora are comparing it to the libraries listed below
Sorting:
- ☆84Updated 3 weeks ago
- Neural network classification of TE☆97Updated 2 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆60Updated last month
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85Updated 4 years ago
- NLR-Annotator upload☆75Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆133Updated 2 weeks ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated last month
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Updated 2 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆101Updated last month
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 3 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆89Updated last year
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Updated last month
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Updated last year
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆86Updated 11 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆49Updated last week
- Synteny Imager☆65Updated last week
- A parallel wrapper for LTR_FINDER☆55Updated 9 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆109Updated 3 weeks ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆76Updated 3 weeks ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆34Updated 2 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆116Updated last month
- Make colorful identity heatmaps of genomic sequence☆128Updated last year
- TransposonUltimate - a holistic set of tools for transposon identification☆85Updated 3 years ago
- A organelle de novo genome assembly toolkit☆71Updated 10 months ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆31Updated 7 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- SRF: Satellite Repeat Finder☆101Updated last year
- A list of software for pangenomics☆165Updated 2 weeks ago
- paml documentation and tutorials☆65Updated 7 months ago