LQHHHHH / paml-yn00-run-pipelineLinks
A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method
☆10Updated 6 months ago
Alternatives and similar repositories for paml-yn00-run-pipeline
Users that are interested in paml-yn00-run-pipeline are comparing it to the libraries listed below
Sorting:
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 10 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆21Updated last year
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- An Example of Subgenome Phasing for Complex Allopolyploidy☆13Updated 3 months ago
- ☆40Updated 2 years ago
- ☆24Updated last year
- ☆31Updated 5 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 7 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 5 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆36Updated 2 months ago
- Automated pipeline for running CoalHMM☆13Updated last year
- ☆25Updated 3 years ago
- a Semi-automated pipeline for assembling T2T genome☆20Updated 3 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆29Updated 2 months ago
- Genome Annotation Pipeline☆36Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- HiCAT new project☆28Updated 3 months ago