A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method
☆10Feb 26, 2025Updated last year
Alternatives and similar repositories for paml-yn00-run-pipeline
Users that are interested in paml-yn00-run-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Mar 19, 2021Updated 5 years ago
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 11 months ago
- Dynamic Elongation of a Genome Assembly Path☆28Jul 27, 2026Updated 2 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A method for measuring chromosome-specific telomere length from long reads☆22May 20, 2024Updated 2 years ago
- Heuristic search algorithm for fitting qpGraph models☆11Aug 4, 2022Updated 4 years ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- Algorithm For Gene Order Reconstruction in Ancestors☆86Jul 8, 2026Updated 2 months ago
- ☆32Dec 16, 2022Updated 3 years ago
- Phylogenetic tools for Eco-phylogenetics☆15Oct 10, 2024Updated last year
- Convergent substitution detection tool based on the PCOC model☆32Dec 2, 2021Updated 4 years ago
- ☆22May 7, 2026Updated 4 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- a gap-filling tools of genome in complex region.☆27Dec 30, 2025Updated 8 months ago
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated last year
- A tool for performing collinearity-incorporating homology inference☆34Jul 17, 2026Updated 2 months ago
- ☆77Apr 23, 2020Updated 6 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆79May 20, 2024Updated 2 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated 2 years ago
- ☆17Mar 2, 2024Updated 2 years ago
- ☆16Apr 16, 2026Updated 5 months ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Nov 5, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Make Pseudo-Reference Genome from VCF/BCF☆14Oct 5, 2020Updated 5 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆16Jan 29, 2024Updated 2 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆13Jun 19, 2025Updated last year
- ☆10Feb 27, 2026Updated 7 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆40Sep 22, 2025Updated last year
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- Inferring natural selection by comparative population genomic analysis across species