jkimlab / DESCHRAMBLERLinks
☆24Updated last year
Alternatives and similar repositories for DESCHRAMBLER
Users that are interested in DESCHRAMBLER are comparing it to the libraries listed below
Sorting:
- ☆21Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- ☆31Updated 5 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆30Updated 2 months ago
- ☆40Updated 2 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 6 months ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 5 months ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- ☆27Updated 4 months ago
- Genome Annotation Pipeline☆36Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 7 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 6 months ago
- ☆28Updated 3 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 7 months ago
- Automated pipeline for running CoalHMM☆13Updated last year
- ☆30Updated 7 months ago
- ☆25Updated 3 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated this week
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 10 months ago
- Pooled Sequencing Analysis for Sex Signal☆11Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago