Easily construct the ML species tree with single-copy gene shared by different species.
☆27Oct 26, 2018Updated 8 years ago
Alternatives and similar repositories for EasySpeciesTree
Users that are interested in EasySpeciesTree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated this week
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆127Jul 22, 2025Updated last year
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated last year
- A simple program for evaluate the assembly of a give genome.☆18Mar 3, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Scripts to help transposable elements consensus sequences curation☆11Feb 16, 2018Updated 8 years ago
- Polyploid allele identification☆12Jul 8, 2025Updated last year
- Draw pan- and core-genome curves from proteinortho output☆14Oct 26, 2023Updated 3 years ago
- circos pipeline☆20May 8, 2021Updated 5 years ago
- A tool for performing collinearity-incorporating homology inference☆34Jul 17, 2026Updated 3 months ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- ☆13Apr 30, 2019Updated 7 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆38Oct 26, 2026Updated last week
- De novo annotation of young retrotransposons☆46Apr 24, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- trackc aims to produce beautiful genome tracks that are highly customizable☆19Jun 6, 2026Updated 5 months ago
- Toolkit for evolutionary analyses of linkage groups☆35Jul 17, 2024Updated 2 years ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- ☆43Jun 8, 2023Updated 3 years ago
- Creates Venn diagrams for OrthoMCL output☆17Aug 9, 2017Updated 9 years ago
- Divergence time estimation in the complex history of gene family evolution☆11Oct 26, 2026Updated last week
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- Neural network classification of TE☆104Apr 3, 2026Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool for concatenating multiple fasta alignments for supermatrix phylogenetic analyses☆25Apr 30, 2026Updated 6 months ago
- a software for annotating plant genes☆24Dec 22, 2023Updated 2 years ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- ☆76Apr 23, 2020Updated 6 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 3 years ago
- ☆18Nov 21, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆21Sep 18, 2019Updated 7 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 3 years ago
- Algorithm For Gene Order Reconstruction in Ancestors☆87Jul 8, 2026Updated 3 months ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Jan 10, 2024Updated 2 years ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated 2 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 4 years ago