Easily construct the ML species tree with single-copy gene shared by different species.
☆27Oct 26, 2018Updated 7 years ago
Alternatives and similar repositories for EasySpeciesTree
Users that are interested in EasySpeciesTree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A simple program for evaluate the assembly of a give genome.☆18Mar 3, 2023Updated 3 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated this week
- circos pipeline☆20May 8, 2021Updated 5 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆123Jul 22, 2025Updated last year
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Draw pan- and core-genome curves from proteinortho output☆14Oct 26, 2023Updated 2 years ago
- Phylogenetic tools for Eco-phylogenetics☆15Oct 10, 2024Updated last year
- Creates Venn diagrams for OrthoMCL output☆17Aug 9, 2017Updated 9 years ago
- A tool for concatenating multiple fasta alignments for supermatrix phylogenetic analyses☆25Apr 30, 2026Updated 4 months ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Sep 30, 2024Updated last year
- Neural network classification of TE☆103Apr 3, 2026Updated 5 months ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆34Apr 12, 2018Updated 8 years ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Jan 10, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Scripts for homology and orthology assessment from genomic sequences.☆19Jul 24, 2026Updated 2 months ago
- Toolkit for evolutionary analyses of linkage groups☆35Jul 17, 2024Updated 2 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- ☆32Nov 25, 2019Updated 6 years ago
- Plant genome assembly and annotation pipeline using snakemake☆55May 14, 2025Updated last year
- ☆77Apr 23, 2020Updated 6 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Jun 6, 2019Updated 7 years ago
- ☆43Jun 8, 2023Updated 3 years ago
- Algorithm For Gene Order Reconstruction in Ancestors☆86Jul 8, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 6 years ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Oct 5, 2021Updated 4 years ago
- HiC contact matrix visualization☆24Updated this week
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 7 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- ☆13Apr 30, 2019Updated 7 years ago
- PASA software☆204Feb 12, 2025Updated last year
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 3 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆15Oct 1, 2021Updated 4 years ago
- Long read QC, assembly and scaffolding pipeline☆13Jul 13, 2020Updated 6 years ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆931Sep 19, 2026Updated last week
- A tool for performing collinearity-incorporating homology inference☆34Jul 17, 2026Updated 2 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- trackc aims to produce beautiful genome tracks that are highly customizable☆19Jun 6, 2026Updated 3 months ago