Alternatives and similar repositories for EasySpeciesTree:

Users that are interested in EasySpeciesTree are comparing it to the libraries listed below

• wonaya / ParaAT
  ☆9Updated 9 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆42Updated last year
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆35Updated 2 years ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• yongzhiyang2012 / WGDdetector
  ☆21Updated 5 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 7 months ago
• Dee-chen / Tree2gd
  ☆39Updated 2 years ago
• WenchaoLin / assemblyStatistics
  A simple program for evaluate the assembly of a give genome.
  ☆18Updated 2 years ago
• baduelp / public
  ☆16Updated 5 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆30Updated 3 years ago
• WenchaoLin / GCcalc
  Calculate circos format data of GC content and GC skew from genome data.
  ☆12Updated 10 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆29Updated last year
• lardo / khaper
  ☆27Updated 2 years ago
• Zhanmengtao / bin
  scripts
  ☆15Updated 6 years ago
• LAILAB-CAU / update-Mo17
  ☆23Updated last year
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆38Updated 6 months ago
• yilinZhang-bio / Watermelon-pangenome
  ☆21Updated last year
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆43Updated 10 months ago
• ShiuLab / PseudogenePipeline
  ☆39Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆20Updated 4 months ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆31Updated 5 months ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆33Updated last month
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆25Updated 3 months ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year