dongwei1220 / EasySpeciesTreeLinks
Easily construct the ML species tree with single-copy gene shared by different species.
☆27Updated 7 years ago
Alternatives and similar repositories for EasySpeciesTree
Users that are interested in EasySpeciesTree are comparing it to the libraries listed below
Sorting:
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated last month
- Plant genome assembly and annotation pipeline using snakemake☆52Updated 8 months ago
- R package to draw syntenic plots in 3 different styles☆44Updated 5 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- ☆29Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- Scripts for NGS processing☆17Updated 8 years ago
- ☆44Updated last year
- ☆16Updated last year
- ☆21Updated 6 years ago
- A simple program for evaluate the assembly of a give genome.☆18Updated 2 years ago
- ☆27Updated 2 years ago
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Updated 4 years ago
- Calculate circos format data of GC content and GC skew from genome data.☆12Updated 4 months ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆46Updated 2 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last week
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Updated 5 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- ☆23Updated 7 years ago
- ☆45Updated 3 years ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago