dongwei1220 / EasySpeciesTree
Easily construct the ML species tree with single-copy gene shared by different species.
☆26Updated 6 years ago
Alternatives and similar repositories for EasySpeciesTree:
Users that are interested in EasySpeciesTree are comparing it to the libraries listed below
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- ☆24Updated 2 years ago
- ☆9Updated 9 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- scripts☆16Updated 6 years ago
- A tool for performing collinearity-incorporating homology inference☆31Updated last year
- ☆21Updated 5 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated last year
- Genome Annotation Pipeline☆35Updated 8 months ago
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- ☆16Updated 6 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆43Updated last year
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- ☆40Updated last year
- ☆29Updated last month
- A genome assembly assessment pipeline.☆37Updated last year
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 7 months ago
- A pipeline for isoseq☆23Updated 6 years ago
- ☆40Updated 2 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 5 years ago
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Pipelines and scripts for analysing RNA-seq,genome and other sequecing data.☆9Updated 5 years ago
- A simple program for evaluate the assembly of a give genome.☆18Updated 2 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 4 months ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 11 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆25Updated last month