Alternatives and similar repositories for asgart

Users that are interested in asgart are comparing it to the libraries listed below

• AndreaGuarracino / paf2chain
  convert PAF format to CHAIN format
  ☆32Updated 2 months ago
• mrvollger / NucFreq
  ☆37Updated last year
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆45Updated 7 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• OmarOakheart / nPhase
  Ploidy agnostic phasing pipeline and algorithm
  ☆46Updated last year
• sanger-tol / PretextMap
  Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.
  ☆22Updated last week
• BioinformaticsToolsmith / Red
  Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
  ☆18Updated last year
• pangenome / pgge
  the pangenome graph evaluator
  ☆27Updated 4 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆41Updated 4 months ago
• maickrau / ribotin
  ☆36Updated 2 weeks ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆52Updated 2 months ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆28Updated last year
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆37Updated 2 months ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆41Updated 2 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆32Updated last year
• ablab / VerityMap
  ☆36Updated 2 years ago
• GonzalezLab / MCHelper
  MCHelper: An automatic tool to curate transposable element libraries
  ☆37Updated last month
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 4 years ago
• iganna / pannagram
  ☆21Updated 2 weeks ago
• baozg / phased-assembly-check
  ☆30Updated 7 months ago
• mrvollger / SafFire
  ☆30Updated 3 months ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• MoritzBlumer / winpca
  WinPCA. A package for windowed principal component analysis.
  ☆30Updated 3 weeks ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated 3 weeks ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆40Updated 8 months ago
• dfguan / asset
  assembly evaluation tool
  ☆35Updated 3 years ago