delehef / asgartLinks
A genome-scale, fast, and precise segmental duplications mapping tool
☆35Updated last year
Alternatives and similar repositories for asgart
Users that are interested in asgart are comparing it to the libraries listed below
Sorting:
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆23Updated 2 months ago
- ☆38Updated 3 months ago
- Statistics and analysis for variation graphs☆47Updated last year
- the pangenome graph evaluator☆29Updated 4 years ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- ☆38Updated last week
- Differential k-mer analysis☆39Updated last year
- Ploidy agnostic phasing pipeline and algorithm☆48Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- convert PAF format to CHAIN format☆34Updated 7 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆42Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28Updated 4 years ago
- Extracting paths from assembly graphs☆24Updated last year
- ☆27Updated 6 months ago
- ☆39Updated 2 years ago
- SV calling for diploid assemblies☆30Updated last year
- ☆29Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated last month
- ☆31Updated 6 years ago
- ☆32Updated 2 weeks ago
- ☆31Updated 8 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 6 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- ☆32Updated last year
- Yet another Hi-C scaffolding tool☆22Updated last year
- FastK based version of Merqury☆30Updated 3 months ago
- Segmental duplication detection tool☆16Updated 2 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago