delehef / asgart
A genome-scale, fast, and precise segmental duplications mapping tool
☆31Updated 4 months ago
Alternatives and similar repositories for asgart:
Users that are interested in asgart are comparing it to the libraries listed below
- ☆35Updated 10 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆21Updated 2 years ago
- the pangenome graph evaluator☆24Updated 3 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆32Updated last month
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 3 weeks ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆35Updated last week
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- Statistics and analysis for variation graphs☆33Updated last month
- assembly evaluation tool☆34Updated 2 years ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆28Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆15Updated 8 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- ☆31Updated last month
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆34Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- ☆34Updated last year
- ☆31Updated 5 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆22Updated last month
- implicit pangenome graph☆51Updated this week
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- ☆17Updated 2 months ago
- Computational Pangenomics☆17Updated 2 years ago