A genome-scale, fast, and precise segmental duplications mapping tool
☆35Sep 11, 2024Updated last year
Alternatives and similar repositories for asgart
Users that are interested in asgart are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Segmental duplication detection tool☆16Feb 7, 2023Updated 3 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Mar 14, 2026Updated last week
- Visualising discordant reads☆15Sep 2, 2015Updated 10 years ago
- ☆18Jan 29, 2025Updated last year
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 5 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 2 years ago
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated last month
- Detecting multi-genome synteny using minimizer graph mapping☆104Updated this week
- Genome alignment and synteny plots☆34Jun 5, 2023Updated 2 years ago
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- Make colorful identity heatmaps of genomic sequence☆128May 24, 2024Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆57Jul 19, 2025Updated 8 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- Portable solution to generate genome alignment chains using lastz☆61Dec 20, 2025Updated 3 months ago
- ☆42May 19, 2025Updated 10 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 9 months ago
- R package to draw syntenic plots in 3 different styles☆45Feb 2, 2026Updated last month
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 4 months ago
- Figures for the CHM13 T2T SD paper.☆11Sep 12, 2021Updated 4 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Algorithm For Gene Order Reconstruction in Ancestors☆82Aug 16, 2025Updated 7 months ago
- ☆186Feb 10, 2026Updated last month
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated 9 months ago
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆25Feb 9, 2026Updated last month
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Feb 9, 2026Updated last month
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated 11 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- Inferring natural selection by comparative population genomic analysis across species☆26Oct 31, 2023Updated 2 years ago
- ☆21Dec 13, 2024Updated last year
- Better Alignments with Translated HMMER☆25Mar 10, 2026Updated 2 weeks ago
- Some useful bioinformatics pipelines for genomics analysis☆14May 25, 2021Updated 4 years ago
- ☆18Nov 9, 2020Updated 5 years ago
- convert PAF format to CHAIN format☆34May 14, 2025Updated 10 months ago
- ☆16Nov 25, 2019Updated 6 years ago