Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
☆13Oct 30, 2018Updated 7 years ago
Alternatives and similar repositories for Ancestral_Genome_Reconstruction
Users that are interested in Ancestral_Genome_Reconstruction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Jul 30, 2026Updated 2 weeks ago
- Algorithm For Gene Order Reconstruction in Ancestors☆87Jul 8, 2026Updated last month
- Add multiple thread function for genome comparison☆17Sep 29, 2021Updated 4 years ago
- Synteny Mapping and Analysis Program☆30Jul 22, 2026Updated 3 weeks ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Jan 6, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆21Nov 21, 2024Updated last year
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- ☆26Updated this week
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆21Jan 18, 2024Updated 2 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- ASTRAL for PaRalogs and Orthologs☆24Sep 13, 2022Updated 3 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆20Apr 24, 2022Updated 4 years ago
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- ☆23Aug 8, 2024Updated 2 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Jul 20, 2026Updated 3 weeks ago
- A pipeline used to identify different modes of duplicated gene pairs☆123Jul 22, 2025Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆22Jul 26, 2023Updated 3 years ago
- Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioi…☆20Dec 10, 2024Updated last year
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Nov 15, 2017Updated 8 years ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 4 years ago
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated 2 months ago
- A program for multimodel inference on speciation and trait evolution☆36Sep 4, 2017Updated 8 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- ☆41Jun 8, 2023Updated 3 years ago
- ☆20Oct 21, 2024Updated last year
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆17Dec 15, 2022Updated 3 years ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆170Nov 4, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated last month
- ☆45Oct 29, 2022Updated 3 years ago
- Create genomic databases with SIFT predictions. Input is an organism's genomic DNA (.fa) file and the gene annotation file (.gtf). Output…☆36Sep 23, 2023Updated 2 years ago
- ☆35Jun 24, 2026Updated last month
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- Visualing species tree from ASTRAL with gene tree discordance☆34Jul 3, 2026Updated last month
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago