☆21Jul 30, 2026Updated 3 months ago
Alternatives and similar repositories for mgra
Users that are interested in mgra are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 8 years ago
- Algorithm For Gene Order Reconstruction in Ancestors☆87Jul 8, 2026Updated 3 months ago
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- ☆20Apr 24, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Divergence time estimation in the complex history of gene family evolution☆11Oct 26, 2026Updated last week
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 3 years ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆17Dec 15, 2022Updated 3 years ago
- ASTRAL for PaRalogs and Orthologs☆24Sep 13, 2022Updated 4 years ago
- Phylogenomic species tree inference under gene duplication and loss☆13Sep 20, 2026Updated last month
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated 2 years ago
- BAMMtools is an R package for analysis of BAMM results☆11Dec 19, 2023Updated 2 years ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 4 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- ☆45Oct 29, 2022Updated 4 years ago
- ☆34Apr 7, 2025Updated last year
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- Visualing species tree from ASTRAL with gene tree discordance☆38Aug 21, 2026Updated 2 months ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆13Jun 2, 2026Updated 5 months ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Oct 22, 2026Updated 2 weeks ago
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆19Updated this week
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated last year
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated 5 months ago
- ☆28Aug 14, 2026Updated 2 months ago
- source code for HpcGridRunner☆17Aug 2, 2021Updated 5 years ago
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 9 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- ☆43Jun 8, 2023Updated 3 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆127Jul 22, 2025Updated last year
- Analyzing combinations of codon substitution histories☆48Oct 26, 2026Updated last week
- ☆13Nov 15, 2017Updated 8 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 9 years ago