Alternatives and similar repositories for MCHelper

Users that are interested in MCHelper are comparing it to the libraries listed below

• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆38Updated 3 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated 2 months ago
• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆53Updated 11 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆38Updated 3 years ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 3 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated 2 weeks ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆92Updated last month
• santiagosnchez / vcf2fasta
  Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
  ☆52Updated last month
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆42Updated 4 years ago
• HuffordLab / GenomeQC
  ☆35Updated 5 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆33Updated 2 years ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆32Updated 4 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated 2 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆36Updated 3 years ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆60Updated last month
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆35Updated 2 years ago
• baozg / phased-assembly-check
  ☆32Updated last year
• vgteam / giraffe-sv-paper
  ☆44Updated last year
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆27Updated 2 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆30Updated 4 months ago
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆47Updated 3 years ago
• i10labtitech / GINGER
  ☆29Updated this week
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆33Updated 4 years ago
• CarineRey / pcoc
  Convergent substitution detection tool based on the PCOC model
  ☆31Updated 4 years ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆58Updated 6 months ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆52Updated this week
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆45Updated 5 months ago
• johnssproul / RepeatProfiler
  ☆27Updated 11 months ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆53Updated last month