MCHelper: An automatic tool to curate transposable element libraries
☆46May 6, 2026Updated 2 weeks ago
Alternatives and similar repositories for MCHelper
Users that are interested in MCHelper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆113Updated this week
- Annotation helper tool for the manual curation of transposable element consensus sequences☆55Mar 5, 2025Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated 11 months ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Oct 1, 2020Updated 5 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆32Apr 11, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆254May 11, 2026Updated last week
- read and analyse RepeatMasker output☆27May 22, 2023Updated 2 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆36Apr 17, 2026Updated last month
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆29Jun 17, 2025Updated 11 months ago
- ☆42May 19, 2025Updated last year
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆16Sep 5, 2024Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Dec 7, 2022Updated 3 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14May 14, 2026Updated last week
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10May 7, 2026Updated 2 weeks ago
- ☆10Jan 29, 2020Updated 6 years ago
- Identification of transposable element families from pangenome polymorphisms☆56Jun 3, 2025Updated 11 months ago
- ☆18Jan 29, 2025Updated last year
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- High-precision TE Annotator☆157Dec 4, 2025Updated 5 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆206May 13, 2026Updated last week
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 3 months ago
- Make colorful identity heatmaps of genomic sequence☆134May 24, 2024Updated last year
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 5 months ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆190Feb 10, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆57Jul 19, 2025Updated 10 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- RepeatIdentifier☆73Mar 19, 2025Updated last year
- De-Novo Repeat Discovery Tool☆237May 5, 2026Updated 2 weeks ago