harris-2374 / THExLinks
Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
☆14Updated last year
Alternatives and similar repositories for THEx
Users that are interested in THEx are comparing it to the libraries listed below
Sorting:
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 6 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- ☆20Updated 9 months ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 10 months ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- ☆16Updated 2 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆9Updated 3 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆19Updated last week
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- ☆24Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- ☆27Updated 2 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 4 months ago
- Automated pipeline for running CoalHMM☆13Updated last year
- ☆29Updated 2 months ago
- ☆12Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 3 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆10Updated 2 weeks ago
- R package to draw syntenic plots in 3 different styles☆41Updated last year
- ☆16Updated 5 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆14Updated last month
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Analyses of sex chromosome evolution in songbirds☆16Updated 5 years ago
- ☆28Updated last year
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 11 months ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year