Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
☆15Jan 29, 2024Updated 2 years ago
Alternatives and similar repositories for THEx
Users that are interested in THEx are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole genome visualization and comparative genomics in R☆22Feb 18, 2025Updated last year
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆16Sep 5, 2024Updated last year
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆27Apr 16, 2026Updated last month
- ☆33Jul 9, 2024Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆26Aug 20, 2020Updated 5 years ago
- Phylogenetic tools for Eco-phylogenetics☆15Oct 10, 2024Updated last year
- Algorithm For Gene Order Reconstruction in Ancestors☆83Aug 16, 2025Updated 9 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆30Feb 23, 2026Updated 3 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆57Jul 19, 2025Updated 10 months ago
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆17Jan 12, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Reference bias measuring toolkit☆20Mar 12, 2026Updated 2 months ago
- Computational Pangenomics☆17Jun 1, 2022Updated 3 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆43Apr 27, 2026Updated 3 weeks ago
- read and analyse RepeatMasker output☆27May 22, 2023Updated 3 years ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- convert various features into a GFF-like file for use in genome browsers☆73Jan 27, 2026Updated 3 months ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- ☆45Dec 11, 2025Updated 5 months ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆12Jun 19, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆26Jan 26, 2026Updated 3 months ago
- Pangenome Mutation-Annotated Networks☆43Apr 9, 2026Updated last month
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 2 months ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- ☆42Dec 29, 2025Updated 4 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Code and binaries related to processing haplotagging data☆16Mar 14, 2022Updated 4 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated 11 months ago
- Visualing species tree from ASTRAL with gene tree discordance☆31May 13, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TR annotation tool VAMPIRE☆18Updated this week
- ☆17Feb 11, 2026Updated 3 months ago
- Statistics and analysis for variation graphs☆51Dec 17, 2024Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 8 months ago
- R Interface to COVID-19 Data Hub☆21Jul 28, 2023Updated 2 years ago
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 5 years ago
- ☆18Jan 29, 2025Updated last year