Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
☆15Jan 29, 2024Updated 2 years ago
Alternatives and similar repositories for THEx
Users that are interested in THEx are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole genome visualization and comparative genomics in R☆24Feb 18, 2025Updated last year
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆17Sep 5, 2024Updated last year
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆28Apr 16, 2026Updated 2 months ago
- ☆33Jul 9, 2024Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆26Aug 20, 2020Updated 5 years ago
- Algorithm For Gene Order Reconstruction in Ancestors☆84Aug 16, 2025Updated 10 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆31Feb 23, 2026Updated 4 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆58Jul 19, 2025Updated 11 months ago
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆17Jan 12, 2024Updated 2 years ago
- Reference bias measuring toolkit☆20Mar 12, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Computational Pangenomics☆17Jun 1, 2022Updated 4 years ago
- Phylogenetic tools for Eco-phylogenetics☆15Oct 10, 2024Updated last year
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆46Jun 10, 2026Updated 3 weeks ago
- read and analyse RepeatMasker output☆27May 22, 2023Updated 3 years ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- convert various features into a GFF-like file for use in genome browsers☆73Jun 17, 2026Updated 2 weeks ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- ☆45Dec 11, 2025Updated 6 months ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆12Jun 19, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆26Jan 26, 2026Updated 5 months ago
- Pangenome Mutation-Annotated Networks☆45Jun 6, 2026Updated 3 weeks ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 3 months ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- ☆44Dec 29, 2025Updated 6 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Code and binaries related to processing haplotagging data☆16Mar 14, 2022Updated 4 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- Visualing species tree from ASTRAL with gene tree discordance☆33May 13, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TR annotation tool VAMPIRE☆18Jun 22, 2026Updated last week
- ☆17Jun 15, 2026Updated 2 weeks ago
- 🎤 开源语音输入工具 | 比 Typeless 更早的免费方案! | 真的很好用!!!支持豆包流式ASR、OpenAI GPT-4o Transcribe、本地Whisper。按下快捷键说话,文字自动输入到光标处。 🎤 Open-source voice input …☆75Jun 12, 2026Updated 3 weeks ago
- Statistics and analysis for variation graphs☆51Dec 17, 2024Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆40Sep 22, 2025Updated 9 months ago
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 5 years ago
- ☆18Jan 29, 2025Updated last year