Alternatives and similar repositories for THEx

Users that are interested in THEx are comparing it to the libraries listed below

• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆21Updated 4 months ago
• LQHHHHH / paml-yn00-run-pipeline
  A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method
  ☆10Updated 11 months ago
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆38Updated last week
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆33Updated last year
• jkimlab / DESCHRAMBLER
  ☆26Updated 2 weeks ago
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆32Updated 8 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆33Updated 2 years ago
• rpianezza / GenomeDelta
  Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…
  ☆17Updated last year
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆38Updated 2 years ago
• kavonrtep / dante_ltr
  ☆10Updated 8 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated 2 years ago
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 7 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 3 years ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆18Updated 2 years ago
• ShiuLab / PseudogenePipeline
  ☆41Updated 2 years ago
• tangerzhang / calc_switchErr
  ☆31Updated 10 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆25Updated last month
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆13Updated 6 years ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆25Updated 11 months ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆52Updated last week
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆37Updated 11 months ago
• baozg / phased-assembly-check
  ☆32Updated last year
• symgenoevolab / SyntenyFinder
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆35Updated last year
• Argonum-Clever2 / mike
  ☆33Updated 10 months ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆34Updated 3 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆31Updated 4 years ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last month
• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated last year
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆36Updated 3 years ago