conchoecia / odp
oxford dot plots
☆143Updated last week
Alternatives and similar repositories for odp:
Users that are interested in odp are comparing it to the libraries listed below
- Version 5 of the CAFE phylogenetics software☆121Updated this week
- A genome completeness evaluation tool based on miniprot☆190Updated 4 months ago
- ☆197Updated this week
- Generate an interactive dot plot from mummer or minimap alignments☆195Updated last year
- Any Way to Show Multi genomic Synteny☆171Updated 3 months ago
- ☆165Updated 4 months ago
- Fast and accurately polish the genome generated by long reads.☆217Updated 3 weeks ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆152Updated this week
- A bioinformatics tool for working with modified bases☆163Updated 3 weeks ago
- Nanopore data assembler☆140Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆90Updated last week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆114Updated 3 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆294Updated 2 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆174Updated 2 weeks ago
- a tool for inferring species tree from sequencing reads☆146Updated 2 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.☆95Updated last week
- A pipeline used to identify different modes of duplicated gene pairs☆95Updated 4 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆155Updated last year
- Foreign Contamination Screening caller scripts and documentation☆117Updated 2 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆120Updated 2 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆148Updated this week
- Yet another Hi-C scaffolding tool☆138Updated 2 months ago
- Constructing a pangenome gene graph☆179Updated 6 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆174Updated 3 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆240Updated 2 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆196Updated 5 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆132Updated last week
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆115Updated 3 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆110Updated last year