oxford dot plots
☆173Jul 2, 2026Updated last month
Alternatives and similar repositories for odp
Users that are interested in odp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for comparison of synteny conservation at the genome-wide scale.☆16Jun 6, 2024Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆114Jun 12, 2026Updated 2 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆38Jun 26, 2026Updated last month
- ☆197Feb 10, 2026Updated 6 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆255Jan 24, 2025Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆352Jul 27, 2026Updated 2 weeks ago
- Make colorful identity heatmaps of genomic sequence☆139May 24, 2024Updated 2 years ago
- Genome alignment and synteny plots☆36Mar 24, 2026Updated 4 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆211Nov 23, 2025Updated 8 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- A genome completeness evaluation tool based on miniprot☆260Jul 29, 2026Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆484Jul 1, 2026Updated last month
- Algorithm For Gene Order Reconstruction in Ancestors☆86Jul 8, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Earl Grey: A fully automated TE curation and annotation pipeline☆221Updated this week
- Identify and find telomeres, or telomeric repeats in a genome.☆173Nov 24, 2025Updated 8 months ago
- A genome visualization python package for comparative genomics☆416Jun 14, 2026Updated last month
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- An accurate GFF3/GTF lift over pipeline☆548Aug 1, 2023Updated 3 years ago
- haplotypic duplication identification tool☆295Oct 30, 2025Updated 9 months ago
- Align proteins to genomes with splicing and frameshift☆414Jan 5, 2026Updated 7 months ago
- ☆164Apr 13, 2026Updated 4 months ago
- Using Deep Learning to predict gene annotations☆303Jul 22, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for recovering synteny blocks from multiple alignment☆34Oct 18, 2021Updated 4 years ago
- This is the standalone version of the EviAnn pipeline☆182Updated this week
- Chromosome-level synteny plotting using orthologous regions☆32Sep 19, 2024Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆575Feb 14, 2024Updated 2 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆130Jun 18, 2026Updated last month
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated 2 years ago
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆88Jul 20, 2026Updated 3 weeks ago
- Tiberius is a deep learning gene finder.☆130Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Find, circularise and annotate mitogenome from PacBio assemblies☆199May 11, 2025Updated last year
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 5 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆60Jul 19, 2025Updated last year
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆278Updated this week
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆259Jul 10, 2026Updated last month
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- BUSCO_Phylogenomics | Pipeline to construct species phylogenies using BUSCO proteins☆107Jun 30, 2026Updated last month