MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
☆46Nov 21, 2019Updated 6 years ago
Alternatives and similar repositories for MCMCtreeR
Users that are interested in MCMCtreeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth …☆25Jan 21, 2026Updated 4 months ago
- STAG: Species Tree from All Genes☆36Dec 10, 2018Updated 7 years ago
- Drawing reconciled phylogenetic trees allowing 1, 2 or 3 reconcillation levels☆25Oct 24, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 3 months ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- ☆26Jan 26, 2026Updated 4 months ago
- ☆22Sep 12, 2019Updated 6 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆31Feb 23, 2026Updated 3 months ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- Genome alignment and synteny plots☆35Mar 24, 2026Updated 2 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆54Dec 10, 2025Updated 6 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆248Updated this week
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 5 months ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆12Feb 3, 2026Updated 4 months ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 7 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆41May 27, 2026Updated 2 weeks ago
- Newick tree processing☆13May 27, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An R package to infer and analyze synteny networks from protein sequences☆40Jul 23, 2025Updated 10 months ago
- Algorithm For Gene Order Reconstruction in Ancestors☆83Aug 16, 2025Updated 9 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 8 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆10Dec 7, 2022Updated 3 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆66Apr 17, 2026Updated last month
- ☆10Dec 20, 2022Updated 3 years ago
- Visualising discordant reads☆15Sep 2, 2015Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Sep 20, 2022Updated 3 years ago
- ☆41Jun 8, 2023Updated 3 years ago
- ☆17Oct 21, 2024Updated last year
- A program for multimodel inference on speciation and trait evolution☆35Sep 4, 2017Updated 8 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- ☆81May 2, 2026Updated last month
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆12Jun 19, 2025Updated 11 months ago