Alternatives and similar repositories for MCMCtreeR

Users that are interested in MCMCtreeR are comparing it to the libraries listed below

• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆33Updated 3 months ago
• CarineRey / pcoc
  Convergent substitution detection tool based on the PCOC model
  ☆31Updated 3 years ago
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆37Updated last year
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 9 months ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 6 years ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆41Updated 4 months ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆29Updated 8 months ago
• KatharinaHoff / GenomeAnnotation_Workshop
  Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
  ☆16Updated 4 months ago
• sabifo4 / Tutorial_MCMCtree
  MCMCtree tutorials
  ☆24Updated last year
• i10labtitech / GINGER
  ☆28Updated last year
• ShiuLab / PseudogenePipeline
  ☆40Updated last year
• TurakhiaLab / ROADIES
  Tool for fully-automated inference of species trees from raw genome assemblies
  ☆35Updated last week
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆36Updated 2 years ago
• LiaOb21 / colora
  A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…
  ☆20Updated 3 weeks ago
• GDKO / AvP
  Automatic evaluation of HGTs
  ☆29Updated 4 months ago
• symgenoevolab / SyntenyFinder
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆30Updated 4 months ago
• Dee-chen / Tree2gd
  ☆40Updated 2 years ago
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆19Updated last week
• PatrickKueck / FASconCAT-G
  FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…
  ☆34Updated 11 months ago
• Argonum-Clever2 / mike
  ☆29Updated 2 months ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆17Updated last year
• TimothyStephens / Dinoflagellate_Annotation_Workflow
  Dinoflagellate Annotation Workflow
  ☆14Updated 2 years ago
• mongiardino / genesortR
  Sorting and subsampling phylogenomic datasets
  ☆24Updated last month
• esayyari / DiscoVista
  ☆39Updated last year
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆45Updated 8 months ago
• YanCCscu / MEANGS
  MitoDNA extending assembler from NGS data
  ☆21Updated last year
• MaoYafei / TREEasy
  A tool to infer species tree and phylogenetic network from multilocus data
  ☆32Updated 4 years ago