PuttickMacroevolution / MCMCtreeR
MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
☆44Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for MCMCtreeR
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆30Updated 8 months ago
- paml documentation and tutorials☆47Updated last year
- ☆39Updated 2 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆32Updated last year
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆25Updated 3 weeks ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆31Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Genome Annotation Pipeline☆32Updated 3 months ago
- ☆24Updated 10 months ago
- Convergent substitution detection tool based on the PCOC model☆29Updated 2 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 5 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- Dinoflagellate Annotation Workflow☆12Updated 2 years ago
- Sorting and subsampling phylogenomic datasets☆20Updated 9 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆33Updated last year
- Automatic evaluation of HGTs☆25Updated 2 months ago
- ☆61Updated 7 months ago
- ☆38Updated last year
- ☆36Updated last year
- Chromosome-level synteny plotting using orthologous regions☆28Updated 2 months ago
- ☆32Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆35Updated last year
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆34Updated 6 months ago
- R package to draw syntenic plots in 3 different styles☆39Updated 11 months ago
- ☆18Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆23Updated 8 months ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆20Updated last month
- ☆21Updated 10 years ago