DyogenIBENS / SCORPIOSLinks
SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.
☆21Updated last year
Alternatives and similar repositories for SCORPIOS
Users that are interested in SCORPIOS are comparing it to the libraries listed below
Sorting:
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 8 months ago
- ☆45Updated 3 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Multi-genome synteny block visualization tool☆47Updated last week
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆32Updated 7 months ago
- Genome Annotation Pipeline☆39Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated 9 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆31Updated 4 months ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 11 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆33Updated this week
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆40Updated 2 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …☆27Updated 2 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- ☆29Updated last year
- ☆81Updated 2 weeks ago
- ☆33Updated 4 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).☆21Updated 4 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 9 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆41Updated 5 months ago
- Portable solution to generate genome alignment chains using lastz☆59Updated last month
- Identification of transposable element families from pangenome polymorphisms☆53Updated 4 months ago