DyogenIBENS / SCORPIOSLinks
SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.
☆21Updated 10 months ago
Alternatives and similar repositories for SCORPIOS
Users that are interested in SCORPIOS are comparing it to the libraries listed below
Sorting:
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 5 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- ☆41Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Multi-genome synteny block visualization tool☆42Updated 6 months ago
- ☆31Updated 4 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 6 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- Genome Annotation Pipeline☆36Updated 11 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 10 months ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆40Updated 2 years ago
- ☆21Updated last year
- Testing WGD placement along a species tree using gene trees.☆9Updated last month
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- ☆28Updated last year
- ☆32Updated 4 years ago
- ☆76Updated 3 weeks ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆19Updated last year
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆29Updated 2 months ago
- ☆9Updated 4 years ago
- Quantifying Introgression via Branch Lengths☆53Updated 2 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆33Updated 3 weeks ago
- Robust identification of orthologous Synteny with the Orthology Index☆25Updated 3 weeks ago