DyogenIBENS / SCORPIOS
SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.
☆20Updated 4 months ago
Alternatives and similar repositories for SCORPIOS:
Users that are interested in SCORPIOS are comparing it to the libraries listed below
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆29Updated last month
- ☆27Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated last year
- ☆20Updated 5 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆39Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- ASTRAL for PaRalogs and Orthologs☆21Updated 2 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆16Updated 7 months ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆29Updated last month
- Toolkit for evolutionary analyses of linkage groups☆26Updated 6 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 7 months ago
- ☆37Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆13Updated last week
- ☆28Updated 8 months ago
- Centromics: visualing centromeres with multiple omics data☆17Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated 2 weeks ago
- ☆19Updated 2 years ago
- HiCAT new project☆27Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆9Updated 2 years ago
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- Automated pipeline for running CoalHMM☆11Updated last year
- Genome Annotation Pipeline☆35Updated 5 months ago
- ☆32Updated 4 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆33Updated last week
- ☆28Updated 5 months ago