DyogenIBENS / SCORPIOSLinks
SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.
☆22Updated last year
Alternatives and similar repositories for SCORPIOS
Users that are interested in SCORPIOS are comparing it to the libraries listed below
Sorting:
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago
- ☆45Updated 3 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Multi-genome synteny block visualization tool☆47Updated last month
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated 10 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- ☆32Updated 8 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Genome Annotation Pipeline☆39Updated last year
- ☆41Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- ☆23Updated 3 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆34Updated 3 weeks ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆13Updated last week
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- ☆33Updated 4 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 10 months ago
- ☆81Updated last month
- TSEBRA: Transcript Selector for BRAKER☆48Updated this week
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- ☆24Updated last week
- a Semi-automated pipeline for assembling T2T genome☆24Updated last month
- ☆29Updated last year
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆23Updated 5 years ago