linudz / caastoolsLinks
CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.
☆21Updated last year
Alternatives and similar repositories for caastools
Users that are interested in caastools are comparing it to the libraries listed below
Sorting:
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 6 months ago
- Genome alignment and synteny plots☆31Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated 3 weeks ago
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 11 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated this week
- Yet another Hi-C scaffolding tool☆21Updated 10 months ago
- Domain based annotation of transposable elements☆20Updated 3 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆29Updated last week
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆21Updated 2 weeks ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 11 months ago
- Computational Analysis of Gene Expression Evolution☆43Updated last week
- ☆32Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 4 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- ☆32Updated 4 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆39Updated 4 months ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- ☆26Updated last year
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 4 years ago