linudz / caastoolsLinks
CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.
☆21Updated last year
Alternatives and similar repositories for caastools
Users that are interested in caastools are comparing it to the libraries listed below
Sorting:
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Genome alignment and synteny plots☆31Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 7 months ago
- Multi-genome synteny block visualization tool☆44Updated 7 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated last week
- Yet another Hi-C scaffolding tool☆22Updated 10 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆29Updated this week
- Consensus genome annotation using OMA☆26Updated 2 months ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆29Updated 2 weeks ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆21Updated last month
- A genome assembly assessment pipeline.☆37Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆28Updated 3 years ago
- Domain based annotation of transposable elements☆20Updated 4 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆39Updated 5 months ago
- ☆29Updated last year
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- ☆42Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆30Updated last month
- Computational Analysis of Gene Expression Evolution☆43Updated 3 weeks ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- ☆27Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 11 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago