linudz / caastoolsLinks
CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.
☆21Updated last year
Alternatives and similar repositories for caastools
Users that are interested in caastools are comparing it to the libraries listed below
Sorting:
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated last month
- Yet another Hi-C scaffolding tool☆22Updated last year
- Genome alignment and synteny plots☆32Updated 2 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆33Updated last week
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated last month
- R package to draw syntenic plots in 3 different styles☆42Updated 2 months ago
- Multi-genome synteny block visualization tool☆47Updated last week
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated 2 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated 2 months ago
- Chromosome-level synteny plotting using orthologous regions☆30Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆33Updated 3 months ago
- Domain based annotation of transposable elements☆20Updated 3 weeks ago
- ☆28Updated 3 years ago
- ☆43Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆32Updated last month
- A genome assembly assessment pipeline.☆37Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆22Updated 5 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 2 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆41Updated last month
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- ☆28Updated last year
- A pipeline for genomic variant detection with genome assemblies at population scale☆29Updated 4 months ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year