linudz / caastoolsLinks
CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.
☆21Updated last year
Alternatives and similar repositories for caastools
Users that are interested in caastools are comparing it to the libraries listed below
Sorting:
- Genome alignment and synteny plots☆30Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- Multi-genome synteny block visualization tool☆42Updated 6 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated this week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Yet another Hi-C scaffolding tool☆21Updated 9 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆23Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 2 weeks ago
- ☆21Updated this week
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 10 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆25Updated 3 weeks ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- R package to draw syntenic plots in 3 different styles☆41Updated last year
- Consensus genome annotation using OMA☆26Updated last month
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Domain based annotation of transposable elements☆20Updated 2 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated 2 weeks ago
- ☆26Updated 11 months ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 10 months ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago