linudz / caastoolsLinks
CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.
☆23Updated 2 years ago
Alternatives and similar repositories for caastools
Users that are interested in caastools are comparing it to the libraries listed below
Sorting:
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 4 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 3 years ago
- ☆41Updated 8 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated this week
- Infering ancestral synteny with hierarchical orthologous groups☆38Updated 3 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Multi-genome synteny block visualization tool☆52Updated this week
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- Domain based annotation of transposable elements☆21Updated 4 months ago
- ☆16Updated 3 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- ☆29Updated 3 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆38Updated last week
- R package to draw syntenic plots in 3 different styles☆45Updated last week
- Tool for fully-automated inference of species trees from raw genome assemblies☆44Updated 2 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 8 months ago
- ☆29Updated this week
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Updated 6 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 3 months ago