nsmro / synphoni
SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance and genome organization. It thus provides a syntenic complement not only for the last common ancestor of all sample species but for each node of interest within a user-provided cladogram (polytomies accepted).…
☆11Updated last year
Alternatives and similar repositories for synphoni:
Users that are interested in synphoni are comparing it to the libraries listed below
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆9Updated 6 months ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 years ago
- Multi-genome synteny block visualization tool☆32Updated 2 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated last month
- Genome alignment and synteny plots☆29Updated last year
- Diploid genome assembly analysis tools☆14Updated 6 months ago
- ☆22Updated 7 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆13Updated 3 weeks ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆19Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- Yet another Hi-C scaffolding tool☆19Updated 5 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆13Updated 11 months ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 5 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆12Updated 8 months ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 6 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated 11 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆14Updated 3 years ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆29Updated 3 months ago
- ContScout sequence contamination filter tool☆20Updated 2 months ago
- ☆10Updated last month
- FastK based version of Merqury☆23Updated last week
- Toolkit for evolutionary analyses of linkage groups☆28Updated 8 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 9 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆18Updated last week
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated 2 months ago